Protein : Qrob_P0758060.2 Q. robur
Protein Identifier  ? Qrob_P0758060.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PF08879//PF08880 - WRC // QLQ Gene Prediction Quality  validated
Protein length 

Sequence

Length: 353  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0032502 developmental process A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_010G130000g 5 352 + 348 Gaps:17 99.41 339 71.22 1e-160 hypothetical protein
blastp_kegg lcl|gmx:100806024 7 352 + 346 Gaps:27 99.42 345 67.93 4e-148 growth-regulating factor 5-like
blastp_kegg lcl|rcu:RCOM_0652480 1 352 + 352 Gaps:21 99.71 340 66.37 7e-145 hypothetical protein
blastp_kegg lcl|tcc:TCM_029130 9 351 + 343 Gaps:11 99.16 357 63.56 3e-139 Growth-regulating factor 5 putative
blastp_kegg lcl|gmx:100814760 5 352 + 348 Gaps:26 99.44 360 64.25 4e-139 growth-regulating factor 5-like
blastp_kegg lcl|pop:POPTR_0001s16920g 1 347 + 347 Gaps:19 98.82 338 64.67 2e-134 POPTRDRAFT_548577 hypothetical protein
blastp_kegg lcl|cam:101507142 7 352 + 346 Gaps:20 99.44 356 61.02 2e-132 growth-regulating factor 5-like
blastp_kegg lcl|pop:POPTR_0003s06360g 1 347 + 347 Gaps:22 97.94 340 62.16 1e-129 POPTRDRAFT_645840 hypothetical protein
blastp_kegg lcl|vvi:100247998 14 345 + 332 Gaps:50 76.12 381 70.69 4e-118 uncharacterized LOC100247998
blastp_kegg lcl|pmum:103327636 9 351 + 343 Gaps:35 97.80 364 61.24 4e-117 growth-regulating factor 5
blastp_uniprot_sprot sp|Q8L8A6|GRF5_ARATH 1 306 + 306 Gaps:26 83.63 397 40.66 5e-62 Growth-regulating factor 5 OS Arabidopsis thaliana GN GRF5 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AWY8|GRF1_ORYSJ 15 125 + 111 Gaps:7 29.72 397 73.73 1e-52 Growth-regulating factor 1 OS Oryza sativa subsp. japonica GN GRF1 PE 3 SV 1
blastp_uniprot_sprot sp|A2XA73|GRF1_ORYSI 15 124 + 110 Gaps:7 29.55 396 74.36 3e-52 Growth-regulating factor 1 OS Oryza sativa subsp. indica GN GRF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZIK5|GRF4_ORYSJ 16 343 + 328 Gaps:52 74.62 394 44.22 5e-51 Growth-regulating factor 4 OS Oryza sativa subsp. japonica GN GRF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6AWY6|GRF3_ORYSJ 1 128 + 128 Gaps:4 32.04 387 64.52 2e-48 Growth-regulating factor 3 OS Oryza sativa subsp. japonica GN GRF3 PE 3 SV 2
blastp_uniprot_sprot sp|Q8L8A8|GRF2_ARATH 13 203 + 191 Gaps:20 38.32 535 44.39 5e-45 Growth-regulating factor 2 OS Arabidopsis thaliana GN GRF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AWY7|GRF2_ORYSJ 7 145 + 139 Gaps:13 49.17 301 54.05 4e-44 Growth-regulating factor 2 OS Oryza sativa subsp. japonica GN GRF2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6AWY3|GRF6_ORYSJ 8 123 + 116 none 19.24 603 61.21 4e-42 Growth-regulating factor 6 OS Oryza sativa subsp. japonica GN GRF6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZQ12|GRF6_ARATH 13 121 + 109 Gaps:15 49.18 244 63.33 3e-41 Growth-regulating factor 6 OS Arabidopsis thaliana GN GRF6 PE 2 SV 2
blastp_uniprot_sprot sp|Q6AWY4|GRF5_ORYSJ 1 149 + 149 Gaps:28 49.14 348 49.12 5e-41 Growth-regulating factor 5 OS Oryza sativa subsp. japonica GN GRF5 PE 2 SV 1
rpsblast_cdd gnl|CDD|192171 80 123 + 44 none 95.65 46 75.00 2e-18 pfam08879 WRC WRC. The WRC domain named after the conserved Trp-Arg-Cys motif contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding.
rpsblast_cdd gnl|CDD|204086 14 50 + 37 none 100.00 37 45.95 7e-10 pfam08880 QLQ QLQ. The QLQ domain is named after the conserved Gln Leu Gln motif. The QLQ domain is found at the N-terminus of SWI2/SNF2 protein which has been shown to be involved in protein-protein interactions. This domain has thus been postulated to be involved in mediating protein interactions.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 14 49 36 PF08880 none QLQ IPR014978
ProSiteProfiles 15 50 36 PS51666 none QLQ domain profile. IPR014978
SMART 14 50 37 SM00951 none none IPR014978
PANTHER 1 129 129 PTHR31602:SF4 none none none
ProSiteProfiles 80 124 45 PS51667 none WRC domain profile. IPR014977
Pfam 80 123 44 PF08879 none WRC IPR014977
PANTHER 1 129 129 PTHR31602 none none IPR031137

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting