Protein : Qrob_P0755390.2 Q. robur
Protein Identifier  ? Qrob_P0755390.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) 3.4.22.54 - Calpain-3. Code Enzyme  EC:3.4.22.54
Gene Prediction Quality  validated Protein length 

Sequence

Length: 2057  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0004198 calcium-dependent cysteine-type endopeptidase activity Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain by a mechanism using a cysteine residue at the enzyme active center, and requiring the presence of calcium.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103322730 43 2056 + 2014 Gaps:47 93.47 2160 89.50 0.0 calpain-type cysteine protease DEK1
blastp_kegg lcl|pxb:103931431 43 2056 + 2014 Gaps:47 93.00 2171 88.91 0.0 calpain-type cysteine protease DEK1-like
blastp_kegg lcl|pxb:103964702 41 2056 + 2016 Gaps:47 93.56 2160 88.17 0.0 calpain-type cysteine protease DEK1-like
blastp_kegg lcl|mdm:103446971 43 2056 + 2014 Gaps:47 93.47 2160 88.61 0.0 calpain-type cysteine protease DEK1-like
blastp_kegg lcl|rcu:RCOM_0343760 28 2056 + 2029 Gaps:49 94.16 2158 87.89 0.0 calpain putative (EC:3.4.22.52)
blastp_kegg lcl|fve:101315416 43 2056 + 2014 Gaps:47 93.43 2161 88.31 0.0 uncharacterized protein LOC101315416
blastp_kegg lcl|cic:CICLE_v10014012mg 41 2056 + 2016 Gaps:48 96.70 2091 87.14 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_038725 43 2056 + 2014 Gaps:49 93.55 2156 88.20 0.0 Calpain-type cysteine protease family isoform 1
blastp_kegg lcl|vvi:100244915 41 2056 + 2016 Gaps:48 93.56 2159 88.02 0.0 uncharacterized LOC100244915
blastp_kegg lcl|cit:102622111 41 2056 + 2016 Gaps:48 93.57 2161 87.14 0.0 calpain-type cysteine protease DEK1-like
blastp_pdb 1qxp_B 1594 2056 + 463 Gaps:58 52.78 900 33.47 7e-59 mol:protein length:900 mu-like calpain
blastp_pdb 1qxp_A 1594 2056 + 463 Gaps:58 52.78 900 33.47 7e-59 mol:protein length:900 mu-like calpain
blastp_pdb 1kfx_L 1571 2056 + 486 Gaps:68 72.39 699 31.23 2e-56 mol:protein length:699 M-CALPAIN LARGE SUBUNIT
blastp_pdb 1kfu_L 1571 2056 + 486 Gaps:68 72.39 699 31.23 2e-56 mol:protein length:699 M-CALPAIN LARGE SUBUNIT
blastp_pdb 1u5i_A 1571 2056 + 486 Gaps:64 72.29 700 31.03 7e-54 mol:protein length:700 Calpain 2 large [catalytic] subunit precurso
blastp_pdb 1df0_A 1581 2056 + 476 Gaps:55 69.57 700 30.80 1e-53 mol:protein length:700 M-CALPAIN
blastp_pdb 3df0_A 1594 2056 + 463 Gaps:55 66.39 714 31.43 1e-53 mol:protein length:714 Calpain-2 catalytic subunit
blastp_pdb 3bow_A 1594 2056 + 463 Gaps:55 66.39 714 31.43 1e-53 mol:protein length:714 Calpain-2 catalytic subunit
blastp_pdb 2r9f_A 1581 1903 + 323 Gaps:29 94.40 339 38.44 3e-52 mol:protein length:339 Calpain-1 catalytic subunit
blastp_pdb 2r9c_A 1581 1903 + 323 Gaps:29 94.40 339 38.44 3e-52 mol:protein length:339 Calpain-1 catalytic subunit
blastp_uniprot_sprot sp|Q8RVL2|DEK1_ARATH 41 2056 + 2016 Gaps:58 93.54 2151 82.16 0.0 Calpain-type cysteine protease DEK1 OS Arabidopsis thaliana GN DEK1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ZFZ4|DEK1_ORYSJ 26 2056 + 2031 Gaps:58 94.22 2162 74.77 0.0 Calpain-type cysteine protease ADL1 OS Oryza sativa subsp. japonica GN ADL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RVL1|DEK1_MAIZE 43 2056 + 2014 Gaps:57 93.42 2159 72.53 0.0 Calpain-type cysteine protease DEK1 OS Zea mays GN DEK1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92177|CAN3_CHICK 1579 2054 + 476 Gaps:109 65.80 810 33.96 4e-63 Calpain-3 OS Gallus gallus GN CAPN3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D805|CAN9_MOUSE 1594 2048 + 455 Gaps:64 65.65 690 36.20 7e-63 Calpain-9 OS Mus musculus GN Capn9 PE 2 SV 2
blastp_uniprot_sprot sp|P34308|CAN_CAEEL 1594 2056 + 463 Gaps:78 60.38 780 37.15 1e-62 Calpain clp-1 OS Caenorhabditis elegans GN clp-1 PE 3 SV 4
blastp_uniprot_sprot sp|O35920|CAN9_RAT 1594 2048 + 455 Gaps:62 65.65 690 35.32 2e-62 Calpain-9 OS Rattus norvegicus GN Capn9 PE 2 SV 2
blastp_uniprot_sprot sp|Q11002|CANA_DROME 1601 2054 + 454 Gaps:77 56.16 828 34.84 5e-62 Calpain-A OS Drosophila melanogaster GN CalpA PE 1 SV 2
blastp_uniprot_sprot sp|O35350|CAN1_MOUSE 1581 2056 + 476 Gaps:58 68.44 713 33.20 2e-60 Calpain-1 catalytic subunit OS Mus musculus GN Capn1 PE 1 SV 1
blastp_uniprot_sprot sp|P97571|CAN1_RAT 1592 2056 + 465 Gaps:58 66.90 713 33.75 2e-60 Calpain-1 catalytic subunit OS Rattus norvegicus GN Capn1 PE 1 SV 1

64 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1909 2048 140 G3DSA:2.60.120.380 none none none
Phobius 894 914 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 608 626 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 785 799 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 942 952 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 1591 1911 321 SSF54001 none none none
Phobius 883 893 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 822 832 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 1585 1910 326 SM00230 none Calpain-like thiol protease family. IPR001300
PANTHER 1972 2056 85 PTHR10183 none none none
PANTHER 1592 1955 364 PTHR10183 none none none
Phobius 953 974 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 1908 2054 147 SSF49758 none none IPR022682
Phobius 207 228 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 87 151 65 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 915 919 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 1601 1901 301 PF00648 none Calpain family cysteine protease IPR001300
Phobius 833 855 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 856 860 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 1771 1847 77 G3DSA:3.90.70.10 none none none
Gene3D 1879 1908 30 G3DSA:3.90.70.10 none none none
Phobius 557 575 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 65 86 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 234 252 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 229 233 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 19 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 20 45 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 177 200 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 1329 1512 184 SSF49899 none none IPR013320
Phobius 201 206 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

19 Localization

Analysis Start End Length
TMHMM 861 883 22
TMHMM 573 595 22
TMHMM 86 108 22
TMHMM 146 168 22
TMHMM 632 654 22
TMHMM 799 821 22
TMHMM 608 627 19
TMHMM 683 705 22
TMHMM 952 974 22
TMHMM 20 42 22
TMHMM 762 784 22
TMHMM 207 229 22
TMHMM 62 81 19
TMHMM 834 856 22
TMHMM 733 755 22
TMHMM 539 558 19
TMHMM 175 197 22
TMHMM 895 917 22
TMHMM 976 998 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting