Protein : Qrob_P0753630.2 Q. robur
Protein Identifier  ? Qrob_P0753630.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=3) K18468 - vacuolar protein sorting-associated protein 35 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 297  
Kegg Orthology  K18468
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0042147 retrograde transport, endosome to Golgi The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
GO:0030904 retromer complex A conserved multimeric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. For example, the budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100243826 7 295 + 289 none 36.58 790 88.24 0.0 vacuolar protein sorting-associated protein 35-like
blastp_kegg lcl|pper:PRUPE_ppa001623mg 7 296 + 290 none 36.71 790 86.90 0.0 hypothetical protein
blastp_kegg lcl|pmum:103321226 7 296 + 290 none 36.71 790 87.24 0.0 vacuolar protein sorting-associated protein 35B
blastp_kegg lcl|pda:103720101 7 296 + 290 none 36.43 796 85.86 0.0 vacuolar protein sorting-associated protein 35B-like
blastp_kegg lcl|pxb:103927555 7 296 + 290 none 36.71 790 85.86 0.0 vacuolar protein sorting-associated protein 35B
blastp_kegg lcl|sly:101249253 7 296 + 290 none 36.66 791 86.90 0.0 vacuolar protein sorting-associated protein 35B-like
blastp_kegg lcl|sot:102587668 7 296 + 290 none 36.66 791 86.21 0.0 vacuolar protein sorting-associated protein 35B-like
blastp_kegg lcl|fve:101302227 7 296 + 290 none 36.71 790 86.21 0.0 vacuolar protein sorting-associated protein 35B-like
blastp_kegg lcl|rcu:RCOM_1598610 7 296 + 290 none 37.42 775 84.83 0.0 vacuolar sorting protein putative
blastp_kegg lcl|cam:101500111 7 296 + 290 none 36.66 791 86.21 0.0 vacuolar protein sorting-associated protein 35B-like
blastp_pdb 2r17_D 9 280 + 272 Gaps:18 91.28 298 41.54 3e-57 mol:protein length:298 Vacuolar protein sorting-associated protein 3
blastp_pdb 2r17_C 9 280 + 272 Gaps:18 91.28 298 41.54 3e-57 mol:protein length:298 Vacuolar protein sorting-associated protein 3
blastp_uniprot_sprot sp|F4I0P8|VP35B_ARATH 7 296 + 290 Gaps:1 36.58 790 79.58 5e-168 Vacuolar protein sorting-associated protein 35B OS Arabidopsis thaliana GN VPS35B PE 1 SV 1
blastp_uniprot_sprot sp|Q7X659|VP35A_ARATH 7 296 + 290 Gaps:3 36.47 787 65.16 9e-134 Vacuolar protein sorting-associated protein 35A OS Arabidopsis thaliana GN VPS35A PE 2 SV 1
blastp_uniprot_sprot sp|A8R7K9|VP35C_ARATH 8 296 + 289 Gaps:7 36.46 790 64.24 1e-127 Vacuolar protein sorting-associated protein 35C OS Arabidopsis thaliana GN VPS35C PE 2 SV 1
blastp_uniprot_sprot sp|Q2HJG5|VPS35_BOVIN 9 294 + 286 Gaps:18 35.93 796 40.21 2e-54 Vacuolar protein sorting-associated protein 35 OS Bos taurus GN VPS35 PE 2 SV 1
blastp_uniprot_sprot sp|Q96QK1|VPS35_HUMAN 9 294 + 286 Gaps:18 35.93 796 40.21 2e-54 Vacuolar protein sorting-associated protein 35 OS Homo sapiens GN VPS35 PE 1 SV 2
blastp_uniprot_sprot sp|Q9EQH3|VPS35_MOUSE 9 294 + 286 Gaps:18 35.93 796 40.21 8e-54 Vacuolar protein sorting-associated protein 35 OS Mus musculus GN Vps35 PE 1 SV 1
blastp_uniprot_sprot sp|P34110|VPS35_YEAST 7 266 + 260 Gaps:35 29.56 944 34.41 1e-37 Vacuolar protein sorting-associated protein 35 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN VPS35 PE 1 SV 2
blastp_uniprot_sprot sp|O74552|VPS35_SCHPO 7 267 + 261 Gaps:26 30.74 836 38.91 1e-35 Vacuolar protein sorting-associated protein 35 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps35 PE 1 SV 2
blastp_uniprot_sprot sp|Q54C24|VPS35_DICDI 20 284 + 265 Gaps:18 32.91 781 34.63 3e-35 Vacuolar protein sorting-associated protein 35 OS Dictyostelium discoideum GN vps35 PE 3 SV 1
rpsblast_cdd gnl|CDD|202710 9 255 + 247 Gaps:12 32.52 741 54.77 9e-96 pfam03635 Vps35 Vacuolar protein sorting-associated protein 35. Vacuolar protein sorting-associated protein (Vps) 35 is one of around 50 proteins involved in protein trafficking. In particular Vps35 assembles into a retromer complex with at least four other proteins Vps5 Vps17 Vps26 and Vps29. Vps35 contains a central region of weaker sequence similarity thought to indicate the presence of at least three domains.
rpsblast_kog gnl|CDD|36323 7 296 + 290 Gaps:14 37.37 760 55.28 9e-95 KOG1107 KOG1107 KOG1107 Membrane coat complex Retromer subunit VPS35 [Intracellular trafficking secretion and vesicular transport].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 8 296 289 PTHR11099 none none IPR005378
Pfam 7 254 248 PF03635 none Vacuolar protein sorting-associated protein 35 IPR005378

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting