Protein : Qrob_P0748370.2 Q. robur
Protein Identifier  ? Qrob_P0748370.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 265  
Kegg Orthology  K08912
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009765 photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:547819 1 264 + 264 none 100.00 264 93.56 0.0 chlorophyll a/b-binding protein precursor
blastp_kegg lcl|gmx:100800351 1 264 + 264 none 100.00 264 93.56 0.0 chlorophyll a-b binding protein 21 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1214080 1 264 + 264 Gaps:1 100.00 265 94.34 0.0 chlorophyll A/B binding protein putative
blastp_kegg lcl|gmx:100799813 1 264 + 264 none 100.00 264 92.80 0.0 chlorophyll a-b binding protein 21 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0633890 1 264 + 264 Gaps:1 100.00 265 94.34 0.0 chlorophyll A/B binding protein putative
blastp_kegg lcl|pmum:103325005 1 264 + 264 Gaps:1 100.00 265 93.96 0.0 chlorophyll a-b binding protein of LHCII type 1-like
blastp_kegg lcl|pper:PRUPE_ppa010081mg 1 264 + 264 Gaps:1 100.00 265 93.96 0.0 hypothetical protein
blastp_kegg lcl|mdm:103419705 1 264 + 264 Gaps:1 100.00 265 93.96 2e-180 chlorophyll a-b binding protein of LHCII type 1-like
blastp_kegg lcl|mdm:103427882 1 264 + 264 Gaps:1 100.00 265 93.96 2e-180 chlorophyll a-b binding protein of LHCII type 1-like
blastp_kegg lcl|mdm:103419710 1 264 + 264 Gaps:1 100.00 265 93.96 2e-180 chlorophyll a-b binding protein of LHCII type 1
blastp_pdb 1vcr_A 35 264 + 230 Gaps:2 100.00 232 93.10 1e-159 mol:protein length:232 Chlorophyll a-b binding protein AB80
blastp_pdb 1rwt_J 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_I 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_H 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_G 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_F 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_E 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_D 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_C 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_B 35 264 + 230 Gaps:2 100.00 232 93.53 9e-159 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_uniprot_sprot sp|P27495|CB24_TOBAC 1 264 + 264 Gaps:3 100.00 267 92.88 2e-180 Chlorophyll a-b binding protein 40 chloroplastic OS Nicotiana tabacum GN CAB40 PE 2 SV 1
blastp_uniprot_sprot sp|P07369|CB2G_SOLLC 1 264 + 264 Gaps:3 100.00 267 92.51 6e-179 Chlorophyll a-b binding protein 3C chloroplastic OS Solanum lycopersicum GN CAB3C PE 3 SV 1
blastp_uniprot_sprot sp|P27493|CB22_TOBAC 1 264 + 264 Gaps:1 100.00 265 90.94 2e-177 Chlorophyll a-b binding protein 21 chloroplastic OS Nicotiana tabacum GN CAB21 PE 2 SV 1
blastp_uniprot_sprot sp|P04783|CB25_PETSP 1 264 + 264 Gaps:3 100.00 267 91.39 2e-177 Chlorophyll a-b binding protein 91R chloroplastic OS Petunia sp. GN CAB91R PE 3 SV 1
blastp_uniprot_sprot sp|P07370|CB2B_SOLLC 1 264 + 264 Gaps:1 100.00 265 90.94 3e-177 Chlorophyll a-b binding protein 1B chloroplastic OS Solanum lycopersicum GN CAB1B PE 3 SV 1
blastp_uniprot_sprot sp|P27491|CB27_TOBAC 1 264 + 264 Gaps:3 100.00 267 91.01 4e-177 Chlorophyll a-b binding protein 7 chloroplastic OS Nicotiana tabacum GN CAB7 PE 3 SV 1
blastp_uniprot_sprot sp|P27496|CB25_TOBAC 1 264 + 264 Gaps:3 100.00 267 91.01 5e-177 Chlorophyll a-b binding protein 50 chloroplastic OS Nicotiana tabacum GN CAB50 PE 2 SV 1
blastp_uniprot_sprot sp|P27492|CB21_TOBAC 1 264 + 264 Gaps:4 100.00 266 92.11 2e-176 Chlorophyll a-b binding protein 16 chloroplastic OS Nicotiana tabacum GN CAB16 PE 2 SV 1
blastp_uniprot_sprot sp|P12469|CB23_NICPL 1 264 + 264 Gaps:3 100.00 267 90.64 9e-176 Chlorophyll a-b binding protein C chloroplastic OS Nicotiana plumbaginifolia GN CABC PE 3 SV 1
blastp_uniprot_sprot sp|P12333|CB2A_SPIOL 1 264 + 264 Gaps:3 100.00 267 90.64 1e-175 Chlorophyll a-b binding protein chloroplastic OS Spinacia oleracea PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 47 261 215 SSF103511 none none IPR023329
Phobius 1 14 14 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 57 256 200 G3DSA:1.10.3460.10 none none IPR023329
PANTHER 10 264 255 PTHR21649:SF9 none none none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 10 264 255 PTHR21649 none none IPR001344
Phobius 15 264 250 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 2 9 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 64 230 167 PF00504 none Chlorophyll A-B binding protein IPR022796
Phobius 10 14 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting