Protein : Qrob_P0746170.2 Q. robur
Protein Identifier  ? Qrob_P0746170.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) PTHR14326:SF15 - CELL CYCLE REGULATED MICROTUBULE ASSOCIATED PROTEIN (PTHR14326:SF15) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 527  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0007067 mitotic nuclear division A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell.
GO:0005874 microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
GO:0005819 spindle The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103337300 7 511 + 505 Gaps:54 96.27 510 64.15 0.0 protein TPX2-like
blastp_kegg lcl|cit:102618042 5 526 + 522 Gaps:54 100.00 518 62.74 0.0 protein TPX2-like
blastp_kegg lcl|cic:CICLE_v10019738mg 5 526 + 522 Gaps:54 100.00 518 62.36 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_016115 13 526 + 514 Gaps:56 97.33 524 63.73 0.0 Cell cycle regulated microtubule associated protein putative isoform 1
blastp_kegg lcl|pop:POPTR_0003s11770g 19 526 + 508 Gaps:59 96.72 518 62.67 0.0 POPTRDRAFT_646516 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa022570mg 7 490 + 484 Gaps:51 100.00 471 64.12 0.0 hypothetical protein
blastp_kegg lcl|vvi:100242735 2 526 + 525 Gaps:58 99.62 521 58.96 0.0 uncharacterized LOC100242735
blastp_kegg lcl|fve:101313808 14 506 + 493 Gaps:62 93.14 510 63.37 0.0 uncharacterized protein LOC101313808
blastp_kegg lcl|rcu:RCOM_1681670 14 526 + 513 Gaps:67 97.22 504 61.02 0.0 protein with unknown function
blastp_kegg lcl|mdm:103437185 15 512 + 498 Gaps:58 94.65 505 61.30 4e-180 protein TPX2
blastp_uniprot_sprot sp|F4I2H7|TPX2_ARATH 237 455 + 219 Gaps:33 25.06 790 41.92 4e-30 Protein TPX2 OS Arabidopsis thaliana GN TPX2 PE 1 SV 1
rpsblast_cdd gnl|CDD|192955 237 432 + 196 Gaps:37 99.43 176 42.29 3e-29 pfam12214 TPX2_importin Cell cycle regulated microtubule associated protein. This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with pfam06886. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 407 486 80 PTHR14326:SF15 none none none
PANTHER 407 486 80 PTHR14326 none none IPR009675
Pfam 237 432 196 PF12214 none Cell cycle regulated microtubule associated protein IPR027330
PANTHER 2 379 378 PTHR14326 none none IPR009675
PANTHER 2 379 378 PTHR14326:SF15 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting