Protein : Qrob_P0741630.2 Q. robur
Protein Identifier  ? Qrob_P0741630.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=2) PTHR15160 - VON HIPPEL-LINDAU PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 296  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0004518 nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103928607 1 289 + 289 Gaps:28 94.72 322 78.36 4e-170 bifunctional nuclease 1-like
blastp_kegg lcl|mdm:103423461 1 289 + 289 Gaps:28 94.72 322 78.36 4e-170 bifunctional nuclease 1-like
blastp_kegg lcl|vvi:100855103 1 289 + 289 Gaps:22 95.11 327 75.24 3e-169 uncharacterized LOC100855103
blastp_kegg lcl|pmum:103320881 1 289 + 289 Gaps:22 95.11 327 76.53 7e-166 bifunctional nuclease 1
blastp_kegg lcl|pper:PRUPE_ppa008537mg 1 289 + 289 Gaps:22 95.11 327 76.53 2e-165 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s03390g 1 289 + 289 Gaps:26 94.17 326 75.90 6e-165 POPTRDRAFT_643079 wound-responsive family protein
blastp_kegg lcl|cit:102622452 1 289 + 289 Gaps:23 94.26 331 75.96 1e-164 bifunctional nuclease 1-like
blastp_kegg lcl|mdm:103410471 4 289 + 286 Gaps:28 82.97 364 76.49 4e-162 bifunctional nuclease 1-like
blastp_kegg lcl|fve:101291116 1 289 + 289 Gaps:22 95.11 327 75.56 3e-161 bifunctional nuclease 1-like
blastp_kegg lcl|tcc:TCM_034097 1 291 + 291 Gaps:23 94.86 331 70.70 2e-157 Bifunctional nuclease in basal defense response 1 isoform 1
blastp_uniprot_sprot sp|Q93VH2|BBD2_ARATH 1 289 + 289 Gaps:23 94.22 329 66.77 8e-145 Bifunctional nuclease 2 OS Arabidopsis thaliana GN BBD2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FWS6|BBD1_ARATH 1 289 + 289 Gaps:33 94.15 325 67.65 5e-139 Bifunctional nuclease 1 OS Arabidopsis thaliana GN BBD1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6YZM6|BBD2_ORYSJ 2 289 + 288 Gaps:24 94.77 325 56.17 2e-113 Bifunctional nuclease 2 OS Oryza sativa subsp. japonica GN BBD2 PE 2 SV 1
blastp_uniprot_sprot sp|Q09LL3|BBD_ORYMI 41 289 + 249 Gaps:28 82.48 331 51.65 2e-82 Bifunctional nuclease OS Oryza minuta GN BBD PE 2 SV 1
blastp_uniprot_sprot sp|Q5N8J3|BBD1_ORYSJ 67 289 + 223 Gaps:23 73.72 331 55.33 1e-81 Bifunctional nuclease 1 OS Oryza sativa subsp. japonica GN BBD1 PE 2 SV 1
blastp_uniprot_sprot sp|B8A8D2|BBD1_ORYSI 67 289 + 223 Gaps:23 73.72 331 55.33 2e-80 Bifunctional nuclease 1 OS Oryza sativa subsp. indica GN BBD1 PE 3 SV 1
rpsblast_cdd gnl|CDD|190350 136 225 + 90 Gaps:19 81.06 132 25.23 2e-08 pfam02577 DNase-RNase Bifunctional nuclease. This family is a bifunctional nuclease with both DNase and RNase activity. It forms a wedge-shaped dimer with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 122 239 118 SSF103256 none none IPR003729
PANTHER 1 288 288 PTHR15160 none none none
PANTHER 1 288 288 PTHR15160:SF1 none none none
Pfam 197 229 33 PF02577 none Bifunctional nuclease IPR003729

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting