Protein : Qrob_P0736390.2 Q. robur
Protein Identifier  ? Qrob_P0736390.2 Organism . Name  Quercus robur
Score  95.8 Score Type  egn
Protein Description  (M=1) PTHR23249:SF16 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 (PTHR23249:SF16) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 105  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0005801 cis-Golgi network The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0017s00860g 1 74 + 74 none 43.79 169 98.65 6e-47 synbindin family protein
blastp_kegg lcl|vvi:100854327 1 83 + 83 none 90.22 92 86.75 9e-47 trafficking protein particle complex subunit 1-like
blastp_kegg lcl|cam:101489835 1 74 + 74 none 43.79 169 95.95 3e-46 trafficking protein particle complex subunit 1-like
blastp_kegg lcl|crb:CARUB_v10010477mg 1 73 + 73 none 43.20 169 97.26 7e-46 hypothetical protein
blastp_kegg lcl|brp:103871297 1 74 + 74 none 43.79 169 95.95 1e-45 trafficking protein particle complex subunit 1
blastp_kegg lcl|cic:CICLE_v10006067mg 1 74 + 74 none 43.79 169 97.30 2e-45 hypothetical protein
blastp_kegg lcl|cit:102623215 1 74 + 74 none 43.79 169 97.30 2e-45 trafficking protein particle complex subunit 1-like
blastp_kegg lcl|aly:ARALYDRAFT_892078 1 73 + 73 none 43.20 169 95.89 5e-45 hypothetical protein
blastp_kegg lcl|ath:AT1G51160 1 73 + 73 none 43.20 169 95.89 5e-45 Sybindin-like domain-containing protein
blastp_kegg lcl|tcc:TCM_015275 1 74 + 74 none 43.79 169 94.59 5e-45 SNARE-like superfamily protein isoform 1
blastp_pdb 2j3t_C 22 73 + 52 Gaps:1 36.55 145 45.28 3e-11 mol:protein length:145 TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT
blastp_uniprot_sprot sp|Q2KMM2|TPPC1_RAT 22 73 + 52 Gaps:1 36.55 145 45.28 1e-10 Trafficking protein particle complex subunit 1 OS Rattus norvegicus GN Trappc1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5NCF2|TPPC1_MOUSE 22 73 + 52 Gaps:1 36.55 145 45.28 1e-10 Trafficking protein particle complex subunit 1 OS Mus musculus GN Trappc1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y5R8|TPPC1_HUMAN 22 73 + 52 Gaps:1 36.55 145 45.28 1e-10 Trafficking protein particle complex subunit 1 OS Homo sapiens GN TRAPPC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q17QI1|TPPC1_BOVIN 22 73 + 52 Gaps:1 36.55 145 45.28 1e-10 Trafficking protein particle complex subunit 1 OS Bos taurus GN TRAPPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q557G3|TPPC1_DICDI 26 75 + 50 none 35.21 142 40.00 2e-10 Trafficking protein particle complex subunit 1 OS Dictyostelium discoideum GN trappc1-1 PE 3 SV 1
rpsblast_cdd gnl|CDD|146632 23 73 + 51 Gaps:1 38.52 135 36.54 5e-14 pfam04099 Sybindin Sybindin-like family. Sybindin is a physiological syndecan-2 ligand on dendritic spines the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses.
rpsblast_kog gnl|CDD|38578 24 73 + 50 Gaps:1 36.43 140 50.98 5e-15 KOG3368 KOG3368 KOG3368 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking secretion and vesicular transport].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 9 76 68 PTHR23249 none none IPR007233
PANTHER 93 99 7 PTHR23249 none none IPR007233
Phobius 104 104 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 24 91 68 SSF64356 none none IPR011012
Pfam 24 75 52 PF04099 none Sybindin-like family IPR007233
Phobius 77 103 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 9 76 68 PTHR23249:SF16 none none none
PANTHER 93 99 7 PTHR23249:SF16 none none none
Phobius 1 76 76 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 76 98 22

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting