Protein : Qrob_P0729990.2 Q. robur
Protein Identifier  ? Qrob_P0729990.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K08489 - syntaxin 16 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 270  
Kegg Orthology  K08489
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005484 SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259549 11 269 + 259 Gaps:3 80.12 327 80.15 2e-148 syntaxin-43-like
blastp_kegg lcl|vvi:100248594 2 269 + 268 Gaps:11 87.74 318 76.34 2e-147 syntaxin-41-like
blastp_kegg lcl|cic:CICLE_v10001826mg 11 269 + 259 Gaps:3 80.37 326 79.39 3e-147 hypothetical protein
blastp_kegg lcl|tcc:TCM_004740 17 269 + 253 Gaps:3 79.50 322 80.08 5e-146 Syntaxin of plants 41 isoform 2
blastp_kegg lcl|cit:102612546 11 269 + 259 Gaps:3 80.37 326 79.01 6e-146 syntaxin-43-like
blastp_kegg lcl|atr:s00057p00109670 11 269 + 259 Gaps:3 82.65 317 77.48 1e-144 AMTR_s00057p00109670 hypothetical protein
blastp_kegg lcl|gmx:100803629 15 269 + 255 Gaps:4 79.94 324 78.76 4e-143 syntaxin-43-like
blastp_kegg lcl|pvu:PHAVU_001G210900g 15 269 + 255 Gaps:4 80.94 320 79.54 2e-142 hypothetical protein
blastp_kegg lcl|gmx:100797056 15 269 + 255 Gaps:4 80.94 320 77.99 3e-141 syntaxin-43-like
blastp_kegg lcl|tcc:TCM_026730 11 269 + 259 Gaps:4 79.46 331 77.19 2e-140 Syntaxin of plants 43 isoform 1
blastp_pdb 3ipd_F 177 267 + 91 Gaps:3 80.73 109 30.68 8e-07 mol:protein length:109 Syntaxin-1A
blastp_pdb 3ipd_B 177 267 + 91 Gaps:3 80.73 109 30.68 8e-07 mol:protein length:109 Syntaxin-1A
blastp_pdb 3hd7_F 177 267 + 91 Gaps:3 80.73 109 30.68 8e-07 mol:protein length:109 Syntaxin-1A
blastp_pdb 3hd7_B 177 267 + 91 Gaps:3 80.73 109 30.68 8e-07 mol:protein length:109 Syntaxin-1A
blastp_pdb 2nps_B 179 242 + 64 none 90.14 71 37.50 1e-06 mol:protein length:71 Syntaxin 13
blastp_uniprot_sprot sp|Q9SUJ1|SYP43_ARATH 11 269 + 259 Gaps:5 78.55 331 73.85 2e-132 Syntaxin-43 OS Arabidopsis thaliana GN SYP43 PE 2 SV 2
blastp_uniprot_sprot sp|O65359|SYP41_ARATH 11 269 + 259 Gaps:6 80.43 322 73.36 4e-130 Syntaxin-41 OS Arabidopsis thaliana GN SYP41 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SWH4|SYP42_ARATH 11 269 + 259 Gaps:4 81.42 323 68.82 3e-127 Syntaxin-42 OS Arabidopsis thaliana GN SYP42 PE 1 SV 1
blastp_uniprot_sprot sp|O14662|STX16_HUMAN 23 241 + 219 Gaps:11 68.92 325 38.84 1e-42 Syntaxin-16 OS Homo sapiens GN STX16 PE 1 SV 3
blastp_uniprot_sprot sp|Q8BVI5|STX16_MOUSE 23 242 + 220 Gaps:14 69.33 326 38.94 6e-42 Syntaxin-16 OS Mus musculus GN Stx16 PE 1 SV 3
blastp_uniprot_sprot sp|Q9P6P1|TLG2_SCHPO 22 265 + 244 Gaps:27 81.40 301 35.92 3e-32 t-SNARE affecting a late Golgi compartment protein 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tlg2 PE 3 SV 1
blastp_uniprot_sprot sp|Q08144|TLG2_YEAST 6 264 + 259 Gaps:40 70.28 397 29.03 2e-21 T-SNARE affecting a late Golgi compartment protein 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TLG2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RBW6|STX12_PONAB 141 253 + 113 Gaps:7 38.41 276 36.79 6e-09 Syntaxin-12 OS Pongo abelii GN STX12 PE 2 SV 1
blastp_uniprot_sprot sp|O94651|PEP12_SCHPO 141 262 + 122 Gaps:6 44.11 263 32.76 2e-08 Syntaxin pep12 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pep12 PE 1 SV 2
blastp_uniprot_sprot sp|Q54JY7|STX7A_DICDI 177 264 + 88 Gaps:2 25.28 356 32.22 6e-08 Syntaxin-7A OS Dictyostelium discoideum GN syn7A PE 1 SV 1
rpsblast_cdd gnl|CDD|34907 20 265 + 246 Gaps:4 88.34 283 24.80 9e-25 COG5325 COG5325 t-SNARE complex subunit syntaxin [Intracellular trafficking and secretion].
rpsblast_cdd gnl|CDD|203323 179 240 + 62 none 100.00 62 35.48 1e-09 pfam05739 SNARE SNARE domain. Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex.
rpsblast_cdd gnl|CDD|128779 24 130 + 107 Gaps:7 95.73 117 29.46 7e-09 smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p.
rpsblast_kog gnl|CDD|36027 21 267 + 247 Gaps:8 82.30 305 47.01 1e-66 KOG0809 KOG0809 KOG0809 SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36029 30 268 + 239 Gaps:16 91.08 269 22.04 8e-14 KOG0811 KOG0811 KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking secretion and vesicular transport].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 243 264 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 30 51 22 Coil none none none
Phobius 265 269 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 179 218 40 PS00914 "Reactome:REACT_11184" Syntaxin / epimorphin family signature. IPR006012
Pfam 23 119 97 PF00804 "Reactome:REACT_11184" Syntaxin IPR006011
SMART 168 235 68 SM00397 none Helical region found in SNAREs IPR000727
SMART 17 132 116 SM00503 "Reactome:REACT_11184" Syntaxin N-terminal domain IPR006011
SUPERFAMILY 22 228 207 SSF47661 none none IPR010989
PANTHER 19 269 251 PTHR19957:SF83 none none none
Gene3D 22 228 207 G3DSA:1.20.58.70 none none none
PANTHER 19 269 251 PTHR19957 none none none
ProSiteProfiles 173 235 63 PS50192 none t-SNARE coiled-coil homology domain profile. IPR000727
Phobius 1 242 242 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 178 240 63 PF05739 none SNARE domain IPR000727

1 Localization

Analysis Start End Length
TMHMM 242 264 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting