Protein : Qrob_P0728580.2 Q. robur
Protein Identifier  ? Qrob_P0728580.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR11638//PTHR11638:SF85 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 237  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0019538 protein metabolic process The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100261804 1 234 + 234 Gaps:6 99.57 231 75.22 7e-113 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|pmum:103330577 6 236 + 231 Gaps:6 95.85 241 74.89 3e-111 clp protease-related protein At4g12060 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa010759mg 3 232 + 230 Gaps:2 97.05 237 73.48 2e-109 hypothetical protein
blastp_kegg lcl|fve:101305974 18 236 + 219 Gaps:1 96.89 225 75.23 4e-106 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|mdm:103438349 1 230 + 230 Gaps:2 95.40 239 69.74 2e-104 clp protease-related protein At4g12060 chloroplastic
blastp_kegg lcl|pxb:103945812 2 230 + 229 Gaps:7 96.23 239 70.43 3e-104 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|tcc:TCM_014991 1 236 + 236 Gaps:10 100.00 230 73.04 1e-103 Double Clp-N motif protein
blastp_kegg lcl|mdm:103418604 3 236 + 234 Gaps:6 98.33 240 69.92 1e-102 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|pxb:103954927 6 236 + 231 Gaps:6 97.08 240 69.53 7e-102 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|cit:102623890 40 236 + 197 Gaps:4 86.27 233 73.63 5e-97 clp protease-related protein At4g12060 chloroplastic-like
blastp_pdb 2y1q_A 84 222 + 139 Gaps:4 94.67 150 42.25 2e-14 mol:protein length:150 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2k77_A 79 222 + 144 Gaps:4 95.21 146 43.88 2e-14 mol:protein length:146 Negative regulator of genetic competence clpC
blastp_pdb 2y1r_H 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_G 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_F 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_E 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_D 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_C 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_B 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_A 79 222 + 144 Gaps:4 95.30 149 42.96 2e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_uniprot_sprot sp|Q8GW78|CLP41_ARATH 25 223 + 199 Gaps:10 79.25 241 61.78 8e-72 Clp protease-related protein At4g12060 chloroplastic OS Arabidopsis thaliana GN At4g12060 PE 1 SV 1
blastp_uniprot_sprot sp|O78410|CLPC_GUITH 87 221 + 135 Gaps:3 16.12 819 33.33 8e-14 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Guillardia theta GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|Q9TM05|CLPC_CYACA 87 221 + 135 Gaps:3 15.46 854 34.09 2e-13 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Cyanidium caldarium GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P37571|CLPC_BACSU 79 222 + 144 Gaps:4 17.16 810 43.88 3e-12 Negative regulator of genetic competence ClpC/MecB OS Bacillus subtilis (strain 168) GN clpC PE 1 SV 1
blastp_uniprot_sprot sp|Q1XDF4|CLPC_PYRYE 87 216 + 130 Gaps:3 15.47 821 31.50 1e-11 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Pyropia yezoensis GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P51332|CLPC_PORPU 87 216 + 130 Gaps:3 15.47 821 31.50 1e-11 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Porphyra purpurea GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P24428|CLPC_MYCLE 87 222 + 136 Gaps:5 15.68 848 30.83 3e-11 Probable ATP-dependent Clp protease ATP-binding subunit OS Mycobacterium leprae (strain TN) GN clpC PE 3 SV 2
blastp_uniprot_sprot sp|P0A523|CLPC_MYCBO 87 222 + 136 Gaps:5 15.68 848 30.83 4e-11 Probable ATP-dependent Clp protease ATP-binding subunit OS Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P0A522|CLPC1_MYCTU 87 222 + 136 Gaps:5 15.68 848 30.83 4e-11 ATP-dependent Clp protease ATP-binding subunit ClpC1 OS Mycobacterium tuberculosis GN clpC1 PE 1 SV 1
blastp_uniprot_sprot sp|A0R574|CLPC1_MYCS2 87 222 + 136 Gaps:5 15.68 848 30.83 4e-11 ATP-dependent Clp protease ATP-binding subunit ClpC1 OS Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN clpC1 PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 87 225 139 SSF81923 none none none
PANTHER 83 231 149 PTHR11638 none none none
Pfam 99 151 53 PF02861 none Clp amino terminal domain IPR004176
Pfam 187 225 39 PF02861 none Clp amino terminal domain IPR004176
Gene3D 87 226 140 G3DSA:1.10.1780.10 none none IPR023150
PANTHER 83 231 149 PTHR11638:SF85 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting