Protein : Qrob_P0728570.2 Q. robur
Protein Identifier  ? Qrob_P0728570.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR11638//PTHR11638:SF85 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 225  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0019538 protein metabolic process The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330577 6 224 + 219 Gaps:18 95.85 241 71.43 9e-104 clp protease-related protein At4g12060 chloroplastic
blastp_kegg lcl|vvi:100261804 1 222 + 222 Gaps:18 99.57 231 70.43 3e-103 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa010759mg 5 220 + 216 Gaps:14 96.20 237 70.18 8e-102 hypothetical protein
blastp_kegg lcl|fve:101305974 18 224 + 207 Gaps:13 96.89 225 71.56 4e-99 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|mdm:103438349 6 224 + 219 Gaps:14 95.82 239 66.38 3e-97 clp protease-related protein At4g12060 chloroplastic
blastp_kegg lcl|mdm:103418604 3 224 + 222 Gaps:18 98.33 240 66.95 1e-96 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|pxb:103945812 2 218 + 217 Gaps:19 96.23 239 66.96 1e-96 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|pxb:103954927 6 224 + 219 Gaps:18 97.08 240 66.95 1e-96 clp protease-related protein At4g12060 chloroplastic-like
blastp_kegg lcl|tcc:TCM_014991 1 224 + 224 Gaps:22 100.00 230 68.26 7e-94 Double Clp-N motif protein
blastp_kegg lcl|rcu:RCOM_1498850 44 224 + 181 Gaps:10 84.14 227 73.82 7e-92 ATP-dependent clp protease putative
blastp_pdb 2y1q_A 75 210 + 136 Gaps:4 94.67 150 40.85 9e-15 mol:protein length:150 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2k77_A 75 210 + 136 Gaps:4 95.21 146 41.73 1e-14 mol:protein length:146 Negative regulator of genetic competence clpC
blastp_pdb 2y1r_H 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_G 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_F 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_E 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_D 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_C 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_B 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_pdb 2y1r_A 75 210 + 136 Gaps:4 95.30 149 40.85 1e-14 mol:protein length:149 NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC
blastp_uniprot_sprot sp|Q8GW78|CLP41_ARATH 25 211 + 187 Gaps:22 79.25 241 58.64 1e-66 Clp protease-related protein At4g12060 chloroplastic OS Arabidopsis thaliana GN At4g12060 PE 1 SV 1
blastp_uniprot_sprot sp|O78410|CLPC_GUITH 75 209 + 135 Gaps:3 16.12 819 33.33 3e-14 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Guillardia theta GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|Q9TM05|CLPC_CYACA 75 209 + 135 Gaps:3 15.46 854 34.09 1e-13 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Cyanidium caldarium GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P37571|CLPC_BACSU 75 210 + 136 Gaps:4 17.53 810 40.85 5e-12 Negative regulator of genetic competence ClpC/MecB OS Bacillus subtilis (strain 168) GN clpC PE 1 SV 1
blastp_uniprot_sprot sp|Q1XDF4|CLPC_PYRYE 75 204 + 130 Gaps:3 15.47 821 31.50 6e-12 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Pyropia yezoensis GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P51332|CLPC_PORPU 75 204 + 130 Gaps:3 15.47 821 31.50 6e-12 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Porphyra purpurea GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P24428|CLPC_MYCLE 75 210 + 136 Gaps:5 15.68 848 30.83 1e-11 Probable ATP-dependent Clp protease ATP-binding subunit OS Mycobacterium leprae (strain TN) GN clpC PE 3 SV 2
blastp_uniprot_sprot sp|A0R574|CLPC1_MYCS2 75 210 + 136 Gaps:5 15.68 848 30.83 2e-11 ATP-dependent Clp protease ATP-binding subunit ClpC1 OS Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN clpC1 PE 3 SV 1
blastp_uniprot_sprot sp|P0A523|CLPC_MYCBO 75 210 + 136 Gaps:5 15.68 848 30.83 2e-11 Probable ATP-dependent Clp protease ATP-binding subunit OS Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN clpC PE 3 SV 1
blastp_uniprot_sprot sp|P0A522|CLPC1_MYCTU 75 210 + 136 Gaps:5 15.68 848 30.83 2e-11 ATP-dependent Clp protease ATP-binding subunit ClpC1 OS Mycobacterium tuberculosis GN clpC1 PE 1 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 175 213 39 PF02861 none Clp amino terminal domain IPR004176
Pfam 87 139 53 PF02861 none Clp amino terminal domain IPR004176
Gene3D 74 214 141 G3DSA:1.10.1780.10 none none IPR023150
PANTHER 71 219 149 PTHR11638:SF85 none none none
PANTHER 71 219 149 PTHR11638 none none none
SUPERFAMILY 75 213 139 SSF81923 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting