Protein : Qrob_P0726740.2 Q. robur
Protein Identifier  ? Qrob_P0726740.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=1) KOG0144//KOG0147 - RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // Transcriptional coactivator CAPER (RRM superfamily) [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 483  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0009908 flower development The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g122650 11 255 + 245 Gaps:58 35.73 862 54.55 3e-52 FCA
blastp_kegg lcl|rcu:RCOM_1001010 21 255 + 235 Gaps:61 41.55 811 51.04 2e-42 Flowering time control protein FCA putative
blastp_kegg lcl|vvi:100255122 21 255 + 235 Gaps:74 37.45 785 57.48 2e-42 FCA flowering time control
blastp_kegg lcl|gmx:100786792 70 255 + 186 Gaps:48 35.33 733 54.83 1e-39 flowering time control protein FCA-like
blastp_kegg lcl|gmx:100798390 72 255 + 184 Gaps:45 34.74 737 54.69 6e-38 flowering time control protein FCA-like
blastp_kegg lcl|pvu:PHAVU_003G116400g 68 255 + 188 Gaps:40 35.43 731 52.90 2e-36 hypothetical protein
blastp_kegg lcl|cam:101498212 69 255 + 187 Gaps:44 35.75 744 51.13 1e-35 flowering time control protein FCA-like
blastp_kegg lcl|pmum:103323187 70 256 + 187 Gaps:50 34.11 733 55.60 1e-34 flowering time control protein FCA
blastp_kegg lcl|pper:PRUPE_ppa002369mg 70 256 + 187 Gaps:53 37.21 680 54.15 9e-34 hypothetical protein
blastp_kegg lcl|fve:101307293 19 255 + 237 Gaps:59 37.34 774 50.17 1e-30 flowering time control protein FCA-like
blastp_pdb 2dgp_A 172 245 + 74 Gaps:8 75.47 106 35.00 3e-08 mol:protein length:106 Bruno-like 4 RNA binding protein
blastp_pdb 2dgq_A 172 226 + 55 none 50.93 108 40.00 5e-07 mol:protein length:108 bruno-like 6 RNA binding protein
blastp_uniprot_sprot sp|O04425|FCA_ARATH 105 255 + 151 Gaps:54 37.22 747 42.45 4e-18 Flowering time control protein FCA OS Arabidopsis thaliana GN FCA PE 1 SV 2
blastp_uniprot_sprot sp|Q0V9L3|CELF4_XENTR 172 245 + 74 Gaps:8 18.87 424 35.00 8e-07 CUGBP Elav-like family member 4 OS Xenopus tropicalis GN celf4 PE 2 SV 1
blastp_uniprot_sprot sp|Q5NVC8|CELF4_PONAB 172 245 + 74 Gaps:8 16.46 486 35.00 8e-07 CUGBP Elav-like family member 4 OS Pongo abelii GN CELF4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9BZC1|CELF4_HUMAN 172 245 + 74 Gaps:8 16.46 486 35.00 8e-07 CUGBP Elav-like family member 4 OS Homo sapiens GN CELF4 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R535|CELF4_MACFA 172 245 + 74 Gaps:8 16.88 474 35.00 8e-07 CUGBP Elav-like family member 4 OS Macaca fascicularis GN CELF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q7TSY6|CELF4_MOUSE 172 245 + 74 Gaps:8 16.46 486 35.00 9e-07 CUGBP Elav-like family member 4 OS Mus musculus GN Celf4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9IBD1|CELF3_DANRE 172 245 + 74 Gaps:8 17.70 452 36.25 1e-06 CUGBP Elav-like family member 3 OS Danio rerio GN celf3 PE 2 SV 2
blastp_uniprot_sprot sp|Q6DGV1|CELF4_DANRE 172 226 + 55 none 10.58 520 40.00 2e-06 CUGBP Elav-like family member 4 OS Danio rerio GN celf4 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZWM3|CEL3B_XENLA 172 245 + 74 Gaps:8 17.32 462 36.25 2e-06 CUGBP Elav-like family member 3-B OS Xenopus laevis GN tnrc4-b PE 2 SV 1
blastp_uniprot_sprot sp|Q91579|CEL3A_XENLA 172 245 + 74 Gaps:8 17.32 462 36.25 2e-06 CUGBP Elav-like family member 3-A OS Xenopus laevis GN tnrc4-a PE 2 SV 2
rpsblast_cdd gnl|CDD|197681 172 241 + 70 Gaps:3 100.00 73 36.99 1e-07 smart00360 RRM RNA recognition motif.
rpsblast_kog gnl|CDD|35366 141 264 + 124 Gaps:14 43.14 510 33.64 9e-18 KOG0144 KOG0144 KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification].
rpsblast_kog gnl|CDD|35369 5 276 + 272 Gaps:37 44.26 549 20.99 1e-08 KOG0147 KOG0147 KOG0147 Transcriptional coactivator CAPER (RRM superfamily) [Transcription].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 388 410 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 441 482 42 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 171 255 85 PTHR24011:SF212 none none IPR031096
Phobius 422 440 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 29 50 22 G3DSA:3.30.70.330 none none IPR012677
Gene3D 170 250 81 G3DSA:3.30.70.330 none none IPR012677
Phobius 377 387 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 173 218 46 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
SMART 172 242 71 SM00360 none RNA recognition motif IPR000504
ProSiteProfiles 171 246 76 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
SUPERFAMILY 143 253 111 SSF54928 none none none
Phobius 1 356 356 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 171 255 85 PTHR24011 none none none
Phobius 411 421 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 357 376 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 390 412 22

0 Qtllist

0 Targeting