Protein : Qrob_P0722950.2 Q. robur
Protein Identifier  ? Qrob_P0722950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K12194 - charged multivesicular body protein 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 173  
Kegg Orthology  K12194
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103498351 8 172 + 165 Gaps:4 73.85 218 86.34 3e-84 vacuolar protein sorting-associated protein 32 homolog 2
blastp_kegg lcl|csv:101221920 8 172 + 165 Gaps:4 73.85 218 85.71 1e-83 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|crb:CARUB_v10005703mg 8 172 + 165 Gaps:4 73.85 218 82.61 6e-80 hypothetical protein
blastp_kegg lcl|tcc:TCM_037724 8 172 + 165 Gaps:4 73.85 218 91.30 1e-78 Vacuolar protein sorting-associated protein 32 isoform 1
blastp_kegg lcl|pda:103702367 2 172 + 171 Gaps:5 98.25 171 87.50 2e-78 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|cam:101500717 8 172 + 165 Gaps:4 73.52 219 91.30 8e-78 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|sly:101264627 8 172 + 165 Gaps:4 73.85 218 89.44 2e-77 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|gmx:100810464 8 172 + 165 Gaps:4 73.85 218 88.82 7e-77 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|gmx:100789724 8 172 + 165 Gaps:4 73.85 218 90.06 7e-77 vacuolar protein sorting-associated protein 32 homolog 2-like
blastp_kegg lcl|pvu:PHAVU_004G173000g 8 172 + 165 Gaps:4 73.85 218 90.06 9e-77 hypothetical protein
blastp_uniprot_sprot sp|Q9SZE4|VP322_ARATH 8 172 + 165 Gaps:5 73.97 219 83.95 8e-77 Vacuolar protein sorting-associated protein 32 homolog 2 OS Arabidopsis thaliana GN VPS32.2 PE 1 SV 1
blastp_uniprot_sprot sp|O82197|VP321_ARATH 8 172 + 165 Gaps:12 72.77 213 84.52 1e-70 Vacuolar protein sorting-associated protein 32 homolog 1 OS Arabidopsis thaliana GN VPS32.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6BSH2|SNF7_DEBHA 3 172 + 170 Gaps:15 77.43 226 40.00 2e-24 Vacuolar-sorting protein SNF7 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN SNF7 PE 3 SV 2
blastp_uniprot_sprot sp|Q9P7F7|SNF7_SCHPO 9 172 + 164 Gaps:9 73.42 222 34.97 3e-19 Vacuolar-sorting protein snf7 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN snf7 PE 3 SV 1
blastp_uniprot_sprot sp|Q5XGW6|CHM4B_XENLA 8 167 + 160 Gaps:4 70.27 222 37.18 3e-15 Charged multivesicular body protein 4b OS Xenopus laevis GN chmp4b PE 2 SV 1
blastp_uniprot_sprot sp|Q6GL11|CHM4B_XENTR 8 167 + 160 Gaps:4 70.27 222 37.18 4e-15 Charged multivesicular body protein 4b OS Xenopus tropicalis GN chmp4b PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBR3|CHMP5_PONAB 9 143 + 135 Gaps:10 60.73 219 37.59 1e-14 Charged multivesicular body protein 5 OS Pongo abelii GN CHMP5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NZZ3|CHMP5_HUMAN 9 143 + 135 Gaps:10 60.73 219 37.59 1e-14 Charged multivesicular body protein 5 OS Homo sapiens GN CHMP5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ABD0|SNF7_CANAL 9 98 + 90 none 39.82 226 43.33 1e-14 Vacuolar-sorting protein SNF7 OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN SNF7 PE 3 SV 1
blastp_uniprot_sprot sp|Q4QQV8|CHMP5_RAT 9 143 + 135 Gaps:10 60.73 219 36.84 3e-14 Charged multivesicular body protein 5 OS Rattus norvegicus GN Chmp5 PE 2 SV 1
rpsblast_cdd gnl|CDD|146145 8 139 + 132 Gaps:8 73.37 169 39.52 1e-23 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_cdd gnl|CDD|185643 9 162 + 154 Gaps:8 69.19 211 29.45 7e-13 PTZ00464 PTZ00464 SNF-7-like protein Provisional.
rpsblast_cdd gnl|CDD|185625 13 130 + 118 Gaps:6 58.64 191 37.50 7e-09 PTZ00446 PTZ00446 vacuolar sorting protein SNF7-like Provisional.
rpsblast_kog gnl|CDD|36869 8 170 + 163 Gaps:6 71.95 221 44.03 1e-35 KOG1656 KOG1656 KOG1656 Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36868 9 160 + 152 Gaps:1 69.27 218 28.48 6e-13 KOG1655 KOG1655 KOG1655 Protein involved in vacuolar protein sorting [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|38122 9 141 + 133 Gaps:9 28.70 439 24.60 2e-10 KOG2911 KOG2911 KOG2911 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|38121 9 157 + 149 Gaps:8 68.42 209 27.27 9e-09 KOG2910 KOG2910 KOG2910 Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 72 93 22 Coil none none none
PANTHER 7 172 166 PTHR22761 none none none
Pfam 8 140 133 PF03357 none Snf7 IPR005024
PANTHER 7 172 166 PTHR22761:SF8 none none none
Coils 105 130 26 Coil none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting