Protein : Qrob_P0722850.2 Q. robur
Protein Identifier  ? Qrob_P0722850.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF12861 - Anaphase-promoting complex subunit 11 RING-H2 finger Gene Prediction Quality  validated
Protein length 

Sequence

Length: 752  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004842 ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
GO:0005680 anaphase-promoting complex A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103324387 24 674 + 651 Gaps:8 97.16 668 75.81 0.0 pentatricopeptide repeat-containing protein At3g24000 mitochondrial-like
blastp_kegg lcl|mdm:103436543 24 674 + 651 Gaps:8 95.75 682 74.58 0.0 pentatricopeptide repeat-containing protein At3g24000 mitochondrial
blastp_kegg lcl|cit:102626348 63 674 + 612 Gaps:2 91.34 670 76.80 0.0 pentatricopeptide repeat-containing protein At3g24000 mitochondrial-like
blastp_kegg lcl|vvi:100258406 13 667 + 655 Gaps:10 50.47 1286 72.11 0.0 uncharacterized LOC100258406
blastp_kegg lcl|tcc:TCM_030473 31 674 + 644 Gaps:5 95.85 675 71.10 0.0 Tetratricopeptide repeat-like superfamily protein isoform 1
blastp_kegg lcl|fve:101294640 67 674 + 608 Gaps:4 93.85 650 74.10 0.0 pentatricopeptide repeat-containing protein At3g24000 mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa023254mg 85 674 + 590 Gaps:13 100.00 563 80.28 0.0 hypothetical protein
blastp_kegg lcl|csv:101211979 41 674 + 634 Gaps:6 94.40 678 69.06 0.0 pentatricopeptide repeat-containing protein At3g24000 mitochondrial-like
blastp_kegg lcl|cmo:103502212 34 674 + 641 Gaps:6 95.15 680 68.01 0.0 pentatricopeptide repeat-containing protein At3g24000 mitochondrial
blastp_kegg lcl|csv:101227245 41 674 + 634 Gaps:7 94.39 677 69.17 0.0 pentatricopeptide repeat-containing protein At3g24000 mitochondrial-like
blastp_pdb 4a0k_B 675 751 + 77 Gaps:8 67.52 117 39.24 5e-13 mol:protein length:117 E3 UBIQUITIN-PROTEIN LIGASE RBX1
blastp_pdb 2hye_D 675 751 + 77 Gaps:8 73.15 108 39.24 6e-13 mol:protein length:108 RING-box protein 1
blastp_pdb 1u6g_B 675 751 + 77 Gaps:8 73.15 108 39.24 6e-13 mol:protein length:108 RING-box protein 1
blastp_pdb 4a0l_I 675 751 + 77 Gaps:8 80.61 98 39.24 7e-13 mol:protein length:98 E3 UBIQUITIN-PROTEIN LIGASE RBX1
blastp_pdb 4a0l_F 675 751 + 77 Gaps:8 80.61 98 39.24 7e-13 mol:protein length:98 E3 UBIQUITIN-PROTEIN LIGASE RBX1
blastp_pdb 4a0c_F 675 751 + 77 Gaps:8 80.61 98 39.24 7e-13 mol:protein length:98 E3 UBIQUITIN-PROTEIN LIGASE RBX1
blastp_pdb 4a0c_D 675 751 + 77 Gaps:8 80.61 98 39.24 7e-13 mol:protein length:98 E3 UBIQUITIN-PROTEIN LIGASE RBX1
blastp_pdb 1ldk_C 675 751 + 77 Gaps:8 87.78 90 39.24 7e-13 mol:protein length:90 ring-box protein 1
blastp_pdb 1ldj_B 675 751 + 77 Gaps:8 87.78 90 39.24 7e-13 mol:protein length:90 ring-box protein 1
blastp_pdb 3rtr_H 675 751 + 77 Gaps:8 74.53 106 39.24 8e-13 mol:protein length:106 E3 ubiquitin-protein ligase RBX1
blastp_uniprot_sprot sp|Q9LIQ7|PP252_ARATH 97 674 + 578 none 91.31 633 68.69 0.0 Pentatricopeptide repeat-containing protein At3g24000 mitochondrial OS Arabidopsis thaliana GN PCMP-H87 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LIC3|PP227_ARATH 75 674 + 600 Gaps:11 91.40 628 50.35 4e-170 Putative pentatricopeptide repeat-containing protein At3g13770 mitochondrial OS Arabidopsis thaliana GN PCMP-H85 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SI53|PP147_ARATH 45 674 + 630 Gaps:14 93.81 630 45.35 5e-168 Pentatricopeptide repeat-containing protein At2g03880 mitochondrial OS Arabidopsis thaliana GN PCMP-H44 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUW3|PP172_ARATH 92 674 + 583 Gaps:18 97.12 868 47.21 8e-168 Pentatricopeptide repeat-containing protein At2g27610 OS Arabidopsis thaliana GN PCMP-H60 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LTV8|PP224_ARATH 102 674 + 573 Gaps:8 96.97 694 44.58 9e-168 Pentatricopeptide repeat-containing protein At3g12770 OS Arabidopsis thaliana GN PCMP-H43 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW63|PP251_ARATH 97 674 + 578 Gaps:77 100.00 715 44.06 2e-167 Putative pentatricopeptide repeat-containing protein At3g23330 OS Arabidopsis thaliana GN PCMP-H32 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LFL5|PP390_ARATH 73 674 + 602 Gaps:103 100.00 850 42.71 1e-162 Pentatricopeptide repeat-containing protein At5g16860 OS Arabidopsis thaliana GN PCMP-H92 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVP7|PP307_ARATH 78 674 + 597 Gaps:122 96.52 1064 51.31 3e-162 Pentatricopeptide repeat-containing protein At4g13650 OS Arabidopsis thaliana GN PCMP-H42 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SY02|PP301_ARATH 77 674 + 598 Gaps:105 97.31 781 51.32 2e-161 Pentatricopeptide repeat-containing protein At4g02750 OS Arabidopsis thaliana GN PCMP-H24 PE 3 SV 1
blastp_uniprot_sprot sp|O81767|PP348_ARATH 93 674 + 582 Gaps:25 92.95 823 45.49 5e-160 Pentatricopeptide repeat-containing protein At4g33990 OS Arabidopsis thaliana GN EMB2758 PE 3 SV 2

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 701 744 44 PS50089 none Zinc finger RING-type profile. IPR001841
ProSiteProfiles 504 538 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 138 163 26 PF13812 none Pentatricopeptide repeat domain IPR002885
Pfam 547 663 117 PF14432 none DYW family of nucleic acid deaminases none
Gene3D 265 411 147 G3DSA:1.25.40.10 none none IPR011990
Gene3D 478 523 46 G3DSA:1.25.40.10 none none IPR011990
Gene3D 152 197 46 G3DSA:1.25.40.10 none none IPR011990
ProSiteProfiles 166 200 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 267 301 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 370 415 46 PF13041 none PPR repeat family IPR002885
Pfam 266 314 49 PF13041 none PPR repeat family IPR002885
Pfam 165 211 47 PF13041 none PPR repeat family IPR002885
ProSiteProfiles 368 402 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 675 751 77 PF12861 "UniPathway:UPA00143" Anaphase-promoting complex subunit 11 RING-H2 finger IPR024991
TIGRFAM 168 201 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 370 403 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 137 167 31 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 342 368 27 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 405 433 29 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 269 302 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
PANTHER 86 713 628 PTHR24015 none none none
ProSiteProfiles 236 266 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 438 472 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 100 134 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
SUPERFAMILY 674 750 77 SSF57850 none none none
ProSiteProfiles 302 336 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 403 437 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Gene3D 675 750 76 G3DSA:3.30.40.10 none none IPR013083
Pfam 441 465 25 PF01535 none PPR repeat IPR002885
Pfam 342 366 25 PF01535 none PPR repeat IPR002885

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting