3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| GO:0006338 | chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. |
| GO:0031011 | Ino80 complex | A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pmum:103344169 | 1 | 586 | + | 586 | Gaps:20 | 99.66 | 580 | 67.99 | 0.0 | suppressor protein SRP40 |
| blastp_kegg | lcl|rcu:RCOM_1435310 | 1 | 585 | + | 585 | Gaps:56 | 99.45 | 546 | 74.59 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|pop:POPTR_0013s00970g | 1 | 585 | + | 585 | Gaps:63 | 99.44 | 539 | 74.44 | 0.0 | POPTRDRAFT_570710 PAPA-1-like family protein |
| blastp_kegg | lcl|pper:PRUPE_ppa003740mg | 1 | 586 | + | 586 | Gaps:48 | 99.64 | 552 | 68.00 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|mdm:103450851 | 1 | 586 | + | 586 | Gaps:31 | 99.65 | 571 | 68.01 | 0.0 | cylicin-1 |
| blastp_kegg | lcl|pxb:103962318 | 1 | 586 | + | 586 | Gaps:31 | 99.65 | 571 | 68.01 | 0.0 | ABC transporter F family member 4 |
| blastp_kegg | lcl|pop:POPTR_0005s01700g | 1 | 586 | + | 586 | Gaps:69 | 99.63 | 539 | 72.25 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|tcc:TCM_026770 | 1 | 585 | + | 585 | Gaps:55 | 99.45 | 547 | 68.93 | 0.0 | HIT zinc finger PAPA-1-like conserved region putative |
| blastp_kegg | lcl|cic:CICLE_v10003914mg | 1 | 582 | + | 582 | Gaps:58 | 55.27 | 977 | 69.07 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|cit:102624196 | 1 | 585 | + | 585 | Gaps:58 | 99.45 | 546 | 68.51 | 0.0 | transcriptional regulator ATRX homolog |
| rpsblast_cdd | gnl|CDD|203091 | 445 | 533 | + | 89 | none | 100.00 | 89 | 52.81 | 2e-24 | pfam04795 PAPA-1 PAPA-1-like conserved region. Family of proteins with a conserved region found in PAPA-1 a PAP-1 binding protein. |
6 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Pfam | 545 | 576 | 32 | PF04438 | none | HIT zinc finger | IPR007529 |
| PANTHER | 268 | 588 | 321 | PTHR21561:SF12 | none | none | IPR029523 |
| Coils | 437 | 472 | 36 | Coil | none | none | none |
| Coils | 483 | 504 | 22 | Coil | none | none | none |
| Pfam | 445 | 533 | 89 | PF04795 | none | PAPA-1-like conserved region | IPR006880 |
| PANTHER | 268 | 588 | 321 | PTHR21561 | none | none | none |
6 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
| Bourran_2000_2002_QTL6_Delta.F | Qrob_Chr03 | 3 | s_2HYXJ2_207 | s_1AUAXK_317 | 29.12 | 6,3 | 45,37 | lod | 3.1666 | 0.026 |
| Bourran2_2014_nLBD_3P | Qrob_Chr03 | 3 | s_1ET7H8_604 | s_1BYNB5_834 | 23,73 | 0 | 46,72 | lod | 1,7573 | 3,8 |
| PM_1999_QTL14_peak_Bud_burst_3P | Qrob_Chr03 | 3 | s_2F0SI1_756 | v_6056_735 | 11,78 | 3,78 | 50,78 | lod | 2,5 | 4,5 |
| Bourran2_2014_rEpiBC*_3P | Qrob_Chr03 | 3 | s_1A3B3X_1163 | s_1DKGMO_450 | 23,04 | 4,92 | 41,12 | lod | 2,5668 | 7 |
