Protein : Qrob_P0721610.2 Q. robur
Protein Identifier  ? Qrob_P0721610.2 Organism . Name  Quercus robur
Protein Description  (M=1) PTHR10438//PTHR10438:SF238 - THIOREDOXIN // SUBFAMILY NOT NAMED Alias (in v1)  Qrob_P0370740.1
Code Enzyme  EC:1.6.5.4 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 176  
Kegg Orthology  K03671
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0015035 protein disulfide oxidoreductase activity Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
GO:0045454 cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell.
GO:0006662 glycerol ether metabolic process The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103932459 42 175 + 134 none 72.04 186 85.07 9e-75 thioredoxin F-type chloroplastic-like
blastp_kegg lcl|mdm:103430523 54 175 + 122 none 64.21 190 90.98 2e-74 thioredoxin F-type chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa012372mg 41 175 + 135 Gaps:1 78.36 171 83.58 3e-73 hypothetical protein
blastp_kegg lcl|pxb:103932488 42 175 + 134 Gaps:1 72.19 187 84.44 4e-73 thioredoxin F-type chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_008G053300g 1 175 + 175 Gaps:12 100.00 181 67.40 9e-73 hypothetical protein
blastp_kegg lcl|pop:POPTR_0019s08240g 14 175 + 162 Gaps:3 87.77 188 69.70 2e-72 POPTRDRAFT_826191 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1077810 21 175 + 155 Gaps:3 81.72 186 73.03 9e-72 thioredoxin f-type putative
blastp_kegg lcl|cam:101511948 41 175 + 135 none 74.59 181 80.00 2e-71 thioredoxin F-type chloroplastic-like
blastp_kegg lcl|pmum:103318804 41 175 + 135 Gaps:2 71.05 190 82.96 3e-71 thioredoxin F-type chloroplastic-like
blastp_kegg lcl|vvi:100261565 1 175 + 175 Gaps:3 100.00 172 70.35 4e-71 thioredoxin F chloroplastic-like
blastp_pdb 1faa_A 67 174 + 108 none 87.10 124 75.93 5e-57 mol:protein length:124 THIOREDOXIN F
blastp_pdb 1f9m_B 67 174 + 108 none 96.43 112 75.93 7e-57 mol:protein length:112 THIOREDOXIN F
blastp_pdb 1f9m_A 67 174 + 108 none 96.43 112 75.93 7e-57 mol:protein length:112 THIOREDOXIN F
blastp_pdb 2pvo_C 67 174 + 108 none 97.30 111 75.00 1e-55 mol:protein length:111 Thioredoxin F-type chloroplast
blastp_pdb 2pu9_C 67 174 + 108 none 97.30 111 75.00 1e-55 mol:protein length:111 Thioredoxin F-type chloroplast
blastp_pdb 1aiu_A 75 170 + 96 Gaps:1 90.48 105 41.05 8e-18 mol:protein length:105 THIOREDOXIN
blastp_pdb 1trw_A 75 170 + 96 Gaps:1 90.48 105 40.00 3e-17 mol:protein length:105 THIOREDOXIN
blastp_pdb 1trv_A 75 170 + 96 Gaps:1 90.48 105 40.00 3e-17 mol:protein length:105 THIOREDOXIN
blastp_pdb 1tru_A 75 170 + 96 Gaps:1 90.48 105 40.00 3e-17 mol:protein length:105 THIOREDOXIN
blastp_pdb 1trs_A 75 170 + 96 Gaps:1 90.48 105 40.00 3e-17 mol:protein length:105 THIOREDOXIN
blastp_uniprot_sprot sp|P29450|TRXF_PEA 58 175 + 118 none 64.84 182 82.20 3e-65 Thioredoxin F-type chloroplastic OS Pisum sativum PE 2 SV 1
blastp_uniprot_sprot sp|Q9XFH9|TRXF2_ARATH 46 175 + 130 Gaps:3 69.73 185 76.74 6e-64 Thioredoxin F2 chloroplastic OS Arabidopsis thaliana GN At5g16400 PE 2 SV 1
blastp_uniprot_sprot sp|O48897|TRXF_BRANA 1 175 + 175 Gaps:15 97.80 182 59.55 1e-61 Thioredoxin F-type chloroplastic OS Brassica napus GN TRXF PE 2 SV 1
blastp_uniprot_sprot sp|Q9XFH8|TRXF1_ARATH 54 175 + 122 Gaps:2 67.42 178 78.33 5e-61 Thioredoxin F1 chloroplastic OS Arabidopsis thaliana GN At3g02730 PE 1 SV 2
blastp_uniprot_sprot sp|O81332|TRXF_MESCR 67 175 + 109 none 57.07 191 81.65 2e-60 Thioredoxin F-type chloroplastic OS Mesembryanthemum crystallinum PE 2 SV 1
blastp_uniprot_sprot sp|P09856|TRXF_SPIOL 1 175 + 175 Gaps:35 100.00 190 56.84 1e-59 Thioredoxin F-type chloroplastic OS Spinacia oleracea PE 1 SV 2
blastp_uniprot_sprot sp|Q8S091|TRXF_ORYSJ 1 175 + 175 Gaps:18 100.00 187 59.89 5e-59 Thioredoxin F chloroplastic OS Oryza sativa subsp. japonica GN Os01g0913000 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BDJ3|THIO_CALJA 70 170 + 101 Gaps:2 96.19 105 41.58 2e-17 Thioredoxin OS Callithrix jacchus GN TXN PE 3 SV 3
blastp_uniprot_sprot sp|O14463|TRX1_SCHPO 87 161 + 75 Gaps:1 71.84 103 41.89 3e-17 Thioredoxin-1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN trx1 PE 3 SV 3
blastp_uniprot_sprot sp|P10599|THIO_HUMAN 75 170 + 96 Gaps:1 90.48 105 40.00 2e-16 Thioredoxin OS Homo sapiens GN TXN PE 1 SV 3

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 66 169 104 G3DSA:3.40.30.10 none none IPR012336
ProSitePatterns 91 109 19 PS00194 none Thioredoxin family active site. IPR017937
PANTHER 41 175 135 PTHR10438 none none IPR005746
ProSiteProfiles 51 174 124 PS51352 none Thioredoxin domain profile. IPR012336
PRINTS 138 149 12 PR00421 none Thioredoxin family signature none
PRINTS 98 107 10 PR00421 none Thioredoxin family signature none
PRINTS 90 98 9 PR00421 none Thioredoxin family signature none
SUPERFAMILY 61 171 111 SSF52833 none none IPR012336
Pfam 71 170 100 PF00085 none Thioredoxin IPR013766
PANTHER 41 175 135 PTHR10438:SF238 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting