Protein : Qrob_P0716300.2 Q. robur
Protein Identifier  ? Qrob_P0716300.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=1) K18723 - nucleoporin GLE1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 514  
Kegg Orthology  K18723
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005643 nuclear pore Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
GO:0016973 poly(A)+ mRNA export from nucleus The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_010631 10 513 + 504 Gaps:24 75.78 673 63.14 0.0 Nucleoporin GLE1 putative isoform 1
blastp_kegg lcl|cic:CICLE_v10030923mg 10 513 + 504 Gaps:20 77.42 651 63.49 0.0 hypothetical protein
blastp_kegg lcl|cit:102623856 10 513 + 504 Gaps:20 77.42 651 63.10 0.0 nucleoporin GLE1-like
blastp_kegg lcl|pper:PRUPE_ppa003840mg 9 506 + 498 Gaps:15 89.72 545 61.76 0.0 hypothetical protein
blastp_kegg lcl|pmum:103321868 10 506 + 497 Gaps:14 76.24 644 62.32 0.0 nucleoporin GLE1
blastp_kegg lcl|pop:POPTR_0008s18390g 10 513 + 504 Gaps:38 87.31 536 64.74 0.0 POPTRDRAFT_657451 hypothetical protein
blastp_kegg lcl|mdm:103452048 9 513 + 505 Gaps:16 77.80 644 59.28 0.0 nucleoporin GLE1
blastp_kegg lcl|rcu:RCOM_1083720 9 505 + 497 Gaps:32 78.79 613 59.21 0.0 Nucleoporin GLE1 putative
blastp_kegg lcl|vvi:100245667 10 506 + 497 Gaps:34 74.85 680 58.35 6e-180 uncharacterized LOC100245667
blastp_kegg lcl|gmx:100802744 10 506 + 497 Gaps:23 77.73 651 54.94 6e-180 nucleoporin GLE1-like
blastp_uniprot_sprot sp|Q53GS7|GLE1_HUMAN 284 474 + 191 Gaps:10 27.65 698 33.16 4e-24 Nucleoporin GLE1 OS Homo sapiens GN GLE1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5RAS2|GLE1_PONAB 284 474 + 191 Gaps:10 27.65 698 33.16 5e-24 Nucleoporin GLE1 OS Pongo abelii GN GLE1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8R322|GLE1_MOUSE 306 474 + 169 Gaps:12 25.04 699 33.14 2e-23 Nucleoporin GLE1 OS Mus musculus GN Gle1 PE 1 SV 2
blastp_uniprot_sprot sp|Q4KLN4|GLE1_RAT 306 474 + 169 Gaps:10 25.07 698 33.14 3e-23 Nucleoporin GLE1 OS Rattus norvegicus GN Gle1 PE 2 SV 1
blastp_uniprot_sprot sp|Q3ZBK7|GLE1_BOVIN 306 474 + 169 Gaps:12 25.07 698 32.57 5e-22 Nucleoporin GLE1 OS Bos taurus GN GLE1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DRB1|GLE1_DANRE 284 443 + 160 Gaps:8 23.31 695 35.80 2e-21 Nucleoporin GLE1 OS Danio rerio GN gle1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9V4W1|GLE1_DROME 292 461 + 170 Gaps:7 25.26 677 29.82 1e-15 Nucleoporin GLE1 OS Drosophila melanogaster GN GLE1 PE 2 SV 1
blastp_uniprot_sprot sp|Q55FW7|GLE1_DICDI 243 383 + 141 Gaps:16 18.28 837 31.37 4e-10 Nucleoporin GLE1 OS Dictyostelium discoideum GN gle1 PE 3 SV 1
rpsblast_cdd gnl|CDD|203772 205 449 + 245 Gaps:24 97.59 249 37.04 5e-52 pfam07817 GLE1 GLE1-like protein. The members of this family are sequences that are similar to the human protein GLE1. This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm.
rpsblast_cdd gnl|CDD|162739 22 252 + 231 Gaps:16 20.27 1179 17.15 5e-07 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_kog gnl|CDD|37623 13 482 + 470 Gaps:30 77.50 591 32.53 6e-61 KOG2412 KOG2412 KOG2412 Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification].
rpsblast_kog gnl|CDD|35385 30 187 + 158 Gaps:9 12.79 1259 22.98 7e-09 KOG0163 KOG0163 KOG0163 Myosin class VI heavy chain [Cytoskeleton].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 414 414 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 433 513 81 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 23 500 478 PTHR12960:SF0 none none none
Phobius 415 432 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Coils 52 73 22 Coil none none none
PANTHER 23 500 478 PTHR12960 none none IPR012476
Pfam 205 447 243 PF07817 none GLE1-like protein IPR012476
Coils 106 170 65 Coil none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting