Protein : Qrob_P0715170.2 Q. robur
Protein Identifier  ? Qrob_P0715170.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03236 - translation initiation factor eIF-1A Gene Prediction Quality  validated
Protein length 

Sequence

Length: 143  
Kegg Orthology  K03236
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329184 1 142 + 142 Gaps:3 100.00 145 95.17 8e-92 eukaryotic translation initiation factor 1A
blastp_kegg lcl|atr:s00059p00147020 1 142 + 142 Gaps:3 100.00 145 94.48 2e-91 AMTR_s00059p00147020 hypothetical protein
blastp_kegg lcl|mus:103980953 1 142 + 142 Gaps:2 100.00 144 95.14 3e-91 eukaryotic translation initiation factor 1A
blastp_kegg lcl|sly:101253491 1 142 + 142 Gaps:3 100.00 145 94.48 3e-91 eukaryotic translation initiation factor 1A-like
blastp_kegg lcl|cmo:103497302 1 142 + 142 Gaps:3 100.00 145 94.48 3e-91 eukaryotic translation initiation factor 1A
blastp_kegg lcl|vvi:100252402 1 142 + 142 Gaps:3 100.00 145 94.48 4e-91 eukaryotic translation initiation factor 1A-like
blastp_kegg lcl|vvi:100263709 1 142 + 142 Gaps:3 100.00 145 94.48 4e-91 eukaryotic translation initiation factor 1A-like
blastp_kegg lcl|cmo:103495650 1 142 + 142 Gaps:3 100.00 145 94.48 5e-91 eukaryotic translation initiation factor 1A-like
blastp_kegg lcl|csv:101230314 1 142 + 142 Gaps:3 100.00 145 94.48 5e-91 eukaryotic translation initiation factor 1A-like
blastp_kegg lcl|csv:101207840 1 142 + 142 Gaps:3 100.00 145 94.48 5e-91 eukaryotic translation initiation factor 1A-like
blastp_pdb 1d7q_A 2 134 + 133 Gaps:3 90.91 143 76.92 6e-64 mol:protein length:143 TRANSLATION INITIATION FACTOR 1A
blastp_pdb 2oqk_A 1 117 + 117 none 100.00 117 72.65 3e-59 mol:protein length:117 Putative translation initiation factor eIF-1A
blastp_pdb 1jt8_A 29 111 + 83 Gaps:1 82.35 102 33.33 1e-09 mol:protein length:102 PROBABLE TRANSLATION INITIATION FACTOR 1A
blastp_uniprot_sprot sp|P56331|IF1A_ONOVI 1 142 + 142 Gaps:3 100.00 145 90.34 2e-86 Eukaryotic translation initiation factor 1A OS Onobrychis viciifolia PE 2 SV 2
blastp_uniprot_sprot sp|P47815|IF1A_WHEAT 1 142 + 142 Gaps:2 100.00 144 87.50 4e-84 Eukaryotic translation initiation factor 1A OS Triticum aestivum PE 1 SV 2
blastp_uniprot_sprot sp|Q5RA42|IF1AX_PONAB 1 134 + 134 Gaps:3 90.97 144 77.10 3e-64 Eukaryotic translation initiation factor 1A X-chromosomal OS Pongo abelii GN EIF1AX PE 2 SV 3
blastp_uniprot_sprot sp|Q8BMJ3|IF1AX_MOUSE 1 134 + 134 Gaps:3 90.97 144 77.10 3e-64 Eukaryotic translation initiation factor 1A X-chromosomal OS Mus musculus GN Eif1ax PE 2 SV 3
blastp_uniprot_sprot sp|P47813|IF1AX_HUMAN 1 134 + 134 Gaps:3 90.97 144 77.10 3e-64 Eukaryotic translation initiation factor 1A X-chromosomal OS Homo sapiens GN EIF1AX PE 1 SV 2
blastp_uniprot_sprot sp|O14602|IF1AY_HUMAN 1 134 + 134 Gaps:3 90.97 144 76.34 1e-63 Eukaryotic translation initiation factor 1A Y-chromosomal OS Homo sapiens GN EIF1AY PE 1 SV 4
blastp_uniprot_sprot sp|Q6VV72|IF1A_RAT 1 134 + 134 Gaps:3 90.97 144 75.57 1e-63 Eukaryotic translation initiation factor 1A OS Rattus norvegicus GN Eif1a PE 2 SV 3
blastp_uniprot_sprot sp|Q60872|IF1A_MOUSE 1 134 + 134 Gaps:3 90.97 144 75.57 1e-63 Eukaryotic translation initiation factor 1A OS Mus musculus GN Eif1a PE 2 SV 3
blastp_uniprot_sprot sp|Q6GVM3|IF1AY_PANTR 1 134 + 134 Gaps:3 90.97 144 75.57 1e-63 Eukaryotic translation initiation factor 1A Y-chromosomal OS Pan troglodytes GN EIF1AY PE 2 SV 3
blastp_uniprot_sprot sp|P47814|IF1A_RABIT 1 134 + 134 Gaps:3 90.97 144 74.81 2e-61 Eukaryotic translation initiation factor 1A OS Oryctolagus cuniculus GN EIF1A PE 1 SV 2
rpsblast_cdd gnl|CDD|177798 1 142 + 142 Gaps:3 100.00 145 92.41 2e-64 PLN00208 PLN00208 translation initiation factor (eIF) Provisional.
rpsblast_cdd gnl|CDD|185558 1 140 + 140 Gaps:3 88.39 155 73.72 3e-54 PTZ00329 PTZ00329 eukaryotic translation initiation factor 1A Provisional.
rpsblast_cdd gnl|CDD|128900 28 110 + 83 none 100.00 83 66.27 2e-30 smart00652 eIF1a eukaryotic translation initiation factor 1A.
rpsblast_cdd gnl|CDD|88468 33 109 + 77 none 100.00 77 66.23 3e-28 cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A also referred to as eIF1A in eukaryotes and aIF1A in archaea S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1 43S ribosomal preinitiation complexes can bind to the cap-proximal region but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea..
rpsblast_cdd gnl|CDD|129614 14 111 + 98 Gaps:1 100.00 99 36.36 8e-24 TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes aIF-1A for Archaea. Also called eIF-4C.
rpsblast_cdd gnl|CDD|88422 33 109 + 77 Gaps:1 100.00 78 46.15 1e-21 cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1 43S ribosomal preinitiation complexes can bind to the cap-proximal region but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea..
rpsblast_cdd gnl|CDD|189871 30 94 + 65 none 100.00 65 47.69 2e-20 pfam01176 eIF-1a Translation initiation factor 1A / IF-1. This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 22 96 75 PS50832 none S1 domain IF1 type profile. IPR006196
SMART 28 110 83 SM00652 none eukaryotic translation initiation factor 1A IPR001253
Gene3D 2 140 139 G3DSA:2.40.50.140 none none IPR012340
Pfam 30 94 65 PF01176 none Translation initiation factor 1A / IF-1 IPR006196
ProSitePatterns 41 63 23 PS01262 none Eukaryotic initiation factor 1A signature. IPR018104
PANTHER 2 142 141 PTHR21668 none none IPR001253
Hamap 16 110 95 MF_00216 none Translation initiation factor 1A [eif1a]. IPR001253
TIGRFAM 14 110 97 TIGR00523 none eIF-1A: translation initiation factor eIF-1A IPR001253
ProDom 53 109 57 PD005579 none INITIATION FACTOR TRANSLATION 1A BIOSYNTHESIS EUKARYOTIC EIF-1A AIF-1A EIF-4C 1A IPR001253
SUPERFAMILY 2 137 136 SSF50249 none none IPR012340

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting