Protein : Qrob_P0715160.2 Q. robur
Protein Identifier  ? Qrob_P0715160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12662 - U4/U6 small nuclear ribonucleoprotein PRP4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 580  
Kegg Orthology  K12662
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008380 RNA splicing The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.

48 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_007489 1 579 + 579 Gaps:11 100.00 572 77.80 0.0 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
blastp_kegg lcl|gmx:100800927 1 579 + 579 Gaps:11 100.00 570 76.84 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like
blastp_kegg lcl|pvu:PHAVU_007G249600g 1 579 + 579 Gaps:11 100.00 570 78.25 0.0 hypothetical protein
blastp_kegg lcl|cit:102616360 1 579 + 579 Gaps:6 100.00 579 73.75 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like
blastp_kegg lcl|vvi:100243602 1 579 + 579 Gaps:6 100.00 577 76.78 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like
blastp_kegg lcl|cam:101511647 68 579 + 512 Gaps:5 85.26 597 81.93 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like
blastp_kegg lcl|csv:101207521 1 579 + 579 Gaps:14 100.00 569 74.69 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like
blastp_kegg lcl|cmo:103502534 1 579 + 579 Gaps:14 100.00 569 74.69 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein
blastp_kegg lcl|csv:101225848 1 579 + 579 Gaps:13 100.00 568 74.12 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like
blastp_kegg lcl|gmx:100788948 1 579 + 579 Gaps:11 100.00 570 77.72 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like
blastp_pdb 2xl3_B 277 573 + 297 Gaps:14 89.82 334 45.00 9e-44 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 277 573 + 297 Gaps:14 89.82 334 45.00 9e-44 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 277 573 + 297 Gaps:14 89.82 334 45.00 9e-44 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 277 573 + 297 Gaps:14 89.82 334 45.00 9e-44 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2gnq_A 277 573 + 297 Gaps:14 89.29 336 45.00 1e-43 mol:protein length:336 WD-repeat protein 5
blastp_pdb 3emh_A 277 573 + 297 Gaps:14 94.34 318 45.00 2e-43 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 4ery_A 277 573 + 297 Gaps:14 96.15 312 45.00 3e-43 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_C 277 573 + 297 Gaps:14 96.15 312 45.00 3e-43 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_B 277 573 + 297 Gaps:14 96.15 312 45.00 3e-43 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_A 277 573 + 297 Gaps:14 96.15 312 45.00 3e-43 mol:protein length:312 WD repeat-containing protein 5
blastp_uniprot_sprot sp|O22212|PRP4L_ARATH 78 579 + 502 Gaps:22 89.17 554 66.80 0.0 U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS Arabidopsis thaliana GN EMB2776 PE 2 SV 1
blastp_uniprot_sprot sp|Q3MHE2|PRP4_BOVIN 113 576 + 464 Gaps:32 87.33 521 51.87 5e-135 U4/U6 small nuclear ribonucleoprotein Prp4 OS Bos taurus GN PRPF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q5NVD0|PRP4_PONAB 73 576 + 504 Gaps:44 97.31 521 48.13 6e-135 U4/U6 small nuclear ribonucleoprotein Prp4 OS Pongo abelii GN PRPF4 PE 2 SV 1
blastp_uniprot_sprot sp|O43172|PRP4_HUMAN 113 576 + 464 Gaps:32 87.16 522 51.65 7e-135 U4/U6 small nuclear ribonucleoprotein Prp4 OS Homo sapiens GN PRPF4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9DAW6|PRP4_MOUSE 73 576 + 504 Gaps:44 97.31 521 48.32 2e-134 U4/U6 small nuclear ribonucleoprotein Prp4 OS Mus musculus GN Prpf4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UTC7|YIDC_SCHPO 123 579 + 457 Gaps:64 95.02 462 44.87 9e-100 Uncharacterized WD repeat-containing protein C227.12 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC227.12 PE 4 SV 1
blastp_uniprot_sprot sp|P20053|PRP4_YEAST 148 576 + 429 Gaps:35 90.75 465 36.97 2e-62 U4/U6 small nuclear ribonucleoprotein PRP4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8YRI1|YY46_NOSS1 279 573 + 295 Gaps:16 41.48 1526 57.82 6e-50 Uncharacterized WD repeat-containing protein alr3466 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr3466 PE 4 SV 1
blastp_uniprot_sprot sp|Q8YTC2|Y2800_NOSS1 285 573 + 289 Gaps:16 46.98 1258 60.41 1e-46 Uncharacterized WD repeat-containing protein alr2800 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr2800 PE 4 SV 1
blastp_uniprot_sprot sp|Q8YV57|Y2124_NOSS1 285 576 + 292 Gaps:26 35.71 1683 59.73 1e-45 Uncharacterized WD repeat-containing protein all2124 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN all2124 PE 4 SV 1

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 284 577 294 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSitePatterns 470 484 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
Coils 186 218 33 Coil none none none
ProSiteProfiles 409 450 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSitePatterns 345 359 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
ProSiteProfiles 451 492 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 286 391 106 G3DSA:2.130.10.10 none none IPR015943
Gene3D 392 574 183 G3DSA:2.130.10.10 none none IPR015943
ProSitePatterns 386 400 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
SMART 319 358 40 SM00320 none WD40 repeats IPR001680
SMART 275 316 42 SM00320 none WD40 repeats IPR001680
SMART 444 483 40 SM00320 none WD40 repeats IPR001680
SMART 486 526 41 SM00320 none WD40 repeats IPR001680
SMART 360 399 40 SM00320 none WD40 repeats IPR001680
SMART 529 568 40 SM00320 none WD40 repeats IPR001680
SMART 402 441 40 SM00320 none WD40 repeats IPR001680
ProSiteProfiles 493 535 43 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSitePatterns 428 442 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
SUPERFAMILY 283 567 285 SSF50978 none none IPR017986
Pfam 155 184 30 PF08799 none pre-mRNA processing factor 4 (PRP4) like IPR014906
ProSiteProfiles 326 360 35 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 536 577 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Pfam 488 526 39 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 449 483 35 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 410 441 32 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 289 316 28 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 531 568 38 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 324 358 35 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 362 399 38 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 367 408 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting