Protein : Qrob_P0711950.2 Q. robur
Protein Identifier  ? Qrob_P0711950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03111 - single-strand DNA-binding protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 233  
Kegg Orthology  K03111
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|eus:EUTSA_v10021489mg 1 232 + 232 Gaps:13 100.00 219 67.12 3e-92 hypothetical protein
blastp_kegg lcl|cmo:103495996 4 232 + 229 Gaps:15 99.15 234 64.66 1e-91 single-stranded DNA-binding protein mitochondrial
blastp_kegg lcl|csv:101210420 4 232 + 229 Gaps:21 99.15 234 66.38 1e-91 single-stranded DNA-binding protein mitochondrial-like
blastp_kegg lcl|ath:AT3G18580 1 232 + 232 Gaps:15 100.00 217 68.66 2e-91 single-strand DNA-binding protein
blastp_kegg lcl|aly:ARALYDRAFT_479363 1 232 + 232 Gaps:13 100.00 223 68.16 4e-91 single-strand-binding family protein
blastp_kegg lcl|brp:103869549 1 232 + 232 Gaps:22 100.00 210 68.57 2e-89 single-stranded DNA-binding protein mitochondrial
blastp_kegg lcl|crb:CARUB_v10014576mg 1 232 + 232 Gaps:13 100.00 223 65.47 4e-89 hypothetical protein
blastp_kegg lcl|brp:103837980 1 232 + 232 Gaps:15 100.00 217 66.36 7e-88 single-stranded DNA-binding protein mitochondrial-like
blastp_kegg lcl|rcu:RCOM_1618400 1 232 + 232 Gaps:9 100.00 223 63.68 7e-88 Single-stranded DNA-binding protein mitochondrial precursor putative
blastp_kegg lcl|sot:102596968 7 232 + 226 Gaps:24 98.69 229 62.39 5e-87 single-stranded DNA-binding protein mitochondrial-like
blastp_pdb 3ulp_D 97 212 + 116 Gaps:10 88.71 124 34.55 7e-09 mol:protein length:124 Single-strand binding protein
blastp_pdb 3ulp_C 97 212 + 116 Gaps:10 88.71 124 34.55 7e-09 mol:protein length:124 Single-strand binding protein
blastp_pdb 3ulp_B 97 212 + 116 Gaps:10 88.71 124 34.55 7e-09 mol:protein length:124 Single-strand binding protein
blastp_pdb 3ulp_A 97 212 + 116 Gaps:10 88.71 124 34.55 7e-09 mol:protein length:124 Single-strand binding protein
blastp_pdb 1sru_D 94 212 + 119 Gaps:16 96.46 113 32.11 1e-06 mol:protein length:113 Single-strand binding protein
blastp_pdb 1sru_C 94 212 + 119 Gaps:16 96.46 113 32.11 1e-06 mol:protein length:113 Single-strand binding protein
blastp_pdb 1sru_B 94 212 + 119 Gaps:16 96.46 113 32.11 1e-06 mol:protein length:113 Single-strand binding protein
blastp_pdb 1sru_A 94 212 + 119 Gaps:16 96.46 113 32.11 1e-06 mol:protein length:113 Single-strand binding protein
blastp_pdb 1eyg_D 94 212 + 119 Gaps:16 93.97 116 32.11 2e-06 mol:protein length:116 SINGLE-STRAND DNA-BINDING PROTEIN
blastp_pdb 1eyg_C 94 212 + 119 Gaps:16 93.97 116 32.11 2e-06 mol:protein length:116 SINGLE-STRAND DNA-BINDING PROTEIN
blastp_uniprot_sprot sp|Q84J78|SSBP_ARATH 94 227 + 134 Gaps:6 63.68 201 38.28 1e-25 Single-stranded DNA-binding protein mitochondrial OS Arabidopsis thaliana GN At4g11060 PE 2 SV 1
blastp_uniprot_sprot sp|Q1RK72|SSB_RICBR 97 231 + 135 Gaps:14 82.00 150 31.71 9e-11 Single-stranded DNA-binding protein OS Rickettsia bellii (strain RML369-C) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q89A53|SSB_BUCBP 94 212 + 119 Gaps:10 65.66 166 33.94 6e-10 Single-stranded DNA-binding protein OS Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q8D254|SSB_WIGBR 94 212 + 119 Gaps:10 66.87 163 35.78 7e-10 Single-stranded DNA-binding protein OS Wigglesworthia glossinidia brevipalpis GN ssb PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZCC2|SSB_RICPR 97 224 + 128 Gaps:10 78.95 152 31.67 9e-10 Single-stranded DNA-binding protein OS Rickettsia prowazekii (strain Madrid E) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q92G30|SSB_RICCN 97 212 + 116 Gaps:10 71.05 152 32.41 2e-09 Single-stranded DNA-binding protein OS Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q9RHF4|SSB2_SALTI 94 212 + 119 Gaps:10 61.24 178 33.03 2e-09 Single-stranded DNA-binding protein 2 OS Salmonella typhi GN ssb2 PE 3 SV 1
blastp_uniprot_sprot sp|Q4UJW3|SSB_RICFE 97 227 + 131 Gaps:13 82.89 152 30.16 2e-09 Single-stranded DNA-binding protein OS Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q68Y11|SSB_RICTY 97 212 + 116 Gaps:10 71.05 152 33.33 2e-09 Single-stranded DNA-binding protein OS Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q8A7M7|SSB_BACTN 93 203 + 111 Gaps:9 63.35 161 37.25 1e-08 Single-stranded DNA-binding protein OS Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN ssb PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 94 216 123 G3DSA:2.40.50.140 none none IPR012340
Pfam 97 205 109 PF00436 none Single-strand binding protein family IPR000424
PANTHER 7 212 206 PTHR10302:SF3 none none none
SUPERFAMILY 94 207 114 SSF50249 none none IPR012340
PANTHER 7 212 206 PTHR10302 none none IPR011344
ProSiteProfiles 95 210 116 PS50935 none Single-strand binding (SSB) domain profile. IPR000424

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 28 27

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting