Protein : Qrob_P0708580.2 Q. robur
Protein Identifier  ? Qrob_P0708580.2 Organism . Name  Quercus robur
Score  67.4 Score Type  egn
Gene Prediction Quality  validated Protein length 

Sequence

Length: 181  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003712 transcription cofactor activity Interacting selectively and non-covalently with a regulatory transcription factor and also with the basal transcription machinery in order to modulate transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between regulatory transcription factors and the basal transcription machinery.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101297525 1 140 + 140 Gaps:27 9.67 2234 75.93 4e-49 uncharacterized protein LOC101297525
blastp_kegg lcl|pper:PRUPE_ppa000277mg 1 140 + 140 Gaps:27 8.31 1360 78.76 1e-46 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa023324mg 1 142 + 142 Gaps:27 18.14 634 78.26 4e-46 hypothetical protein
blastp_kegg lcl|mdm:103416613 1 135 + 135 Gaps:27 96.43 112 75.00 5e-46 mediator of RNA polymerase II transcription subunit 15a-like
blastp_kegg lcl|pmum:103318924 1 142 + 142 Gaps:27 8.49 1355 77.39 7e-46 mediator of RNA polymerase II transcription subunit 15a
blastp_kegg lcl|csv:101230455 1 142 + 142 Gaps:27 19.52 589 74.78 1e-45 mediator of RNA polymerase II transcription subunit 15a-like
blastp_kegg lcl|pxb:103956921 38 140 + 103 none 7.57 1361 78.64 3e-45 mediator of RNA polymerase II transcription subunit 15a-like
blastp_kegg lcl|vvi:100853144 43 142 + 100 none 58.82 170 77.00 3e-45 uncharacterized LOC100853144
blastp_kegg lcl|rcu:RCOM_0011080 1 142 + 142 Gaps:26 8.39 1382 72.41 5e-45 transcription cofactor putative
blastp_kegg lcl|pop:POPTR_0001s21210g 1 142 + 142 Gaps:26 21.48 540 74.14 8e-45 POPTRDRAFT_640823 hypothetical protein
blastp_uniprot_sprot sp|F4I171|MD15A_ARATH 1 135 + 135 Gaps:28 8.31 1335 63.06 7e-35 Mediator of RNA polymerase II transcription subunit 15a OS Arabidopsis thaliana GN MED15A PE 1 SV 1
blastp_uniprot_sprot sp|Q9SHV7|MD15C_ARATH 3 107 + 105 Gaps:27 8.34 935 38.46 3e-07 Probable mediator of RNA polymerase II transcription subunit 15c OS Arabidopsis thaliana GN MED15C PE 2 SV 1

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 47 116 70 G3DSA:1.10.246.20 none none IPR003101
SUPERFAMILY 47 117 71 SSF47040 none none IPR003101

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting