Protein : Qrob_P0707340.2 Q. robur
Protein Identifier  ? Qrob_P0707340.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=1) PF02151//PF02861//PF07724//PF10431 - UvrB/uvrC motif // Clp amino terminal domain // AAA domain (Cdc48 subfamily) // C-terminal, D2-small domain, of ClpB protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 726  
Kegg Orthology  K03696
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0019538 protein metabolic process The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103958271 1 723 + 723 Gaps:17 82.74 921 94.23 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic-like
blastp_kegg lcl|pxb:103929965 1 723 + 723 Gaps:17 82.74 921 93.70 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic-like
blastp_kegg lcl|mdm:103454896 1 723 + 723 Gaps:17 82.74 921 93.70 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic
blastp_kegg lcl|pxb:103942721 203 723 + 521 none 85.97 606 96.93 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic
blastp_kegg lcl|cit:102631183 1 723 + 723 Gaps:19 84.07 923 92.53 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic-like
blastp_kegg lcl|vvi:100250896 1 723 + 723 Gaps:18 82.67 923 93.18 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A chloroplastic-like
blastp_kegg lcl|cic:CICLE_v100308632m 204 723 + 520 none 99.81 521 96.92 0.0 hypothetical protein
blastp_kegg lcl|cmo:103502278 1 723 + 723 Gaps:17 82.56 923 93.18 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa001062mg 1 723 + 723 Gaps:17 82.74 921 93.57 0.0 hypothetical protein
blastp_kegg lcl|mdm:103437570 1 717 + 717 Gaps:17 80.77 936 94.05 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic
blastp_pdb 3pxi_C 1 706 + 706 Gaps:117 92.22 758 54.22 0.0 mol:protein length:758 Negative regulator of genetic competence ClpC
blastp_pdb 3pxi_B 1 706 + 706 Gaps:117 92.22 758 54.22 0.0 mol:protein length:758 Negative regulator of genetic competence ClpC
blastp_pdb 3pxi_A 1 706 + 706 Gaps:117 92.22 758 54.22 0.0 mol:protein length:758 Negative regulator of genetic competence ClpC
blastp_pdb 1qvr_C 29 704 + 676 Gaps:113 90.16 854 48.44 3e-173 mol:protein length:854 ClpB protein
blastp_pdb 1qvr_B 29 704 + 676 Gaps:113 90.16 854 48.44 3e-173 mol:protein length:854 ClpB protein
blastp_pdb 1qvr_A 29 704 + 676 Gaps:113 90.16 854 48.44 3e-173 mol:protein length:854 ClpB protein
blastp_pdb 3pxg_F 1 384 + 384 Gaps:78 88.89 468 50.24 1e-117 mol:protein length:468 Negative regulator of genetic competence ClpC
blastp_pdb 3pxg_E 1 384 + 384 Gaps:78 88.89 468 50.24 1e-117 mol:protein length:468 Negative regulator of genetic competence ClpC
blastp_pdb 3pxg_D 1 384 + 384 Gaps:78 88.89 468 50.24 1e-117 mol:protein length:468 Negative regulator of genetic competence ClpC
blastp_pdb 3pxg_C 1 384 + 384 Gaps:78 88.89 468 50.24 1e-117 mol:protein length:468 Negative regulator of genetic competence ClpC
blastp_uniprot_sprot sp|P35100|CLPC_PEA 1 719 + 719 Gaps:17 82.21 922 90.50 0.0 Chaperone protein ClpC chloroplastic OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|P31542|CLPAB_SOLLC 1 725 + 725 Gaps:20 84.07 923 91.62 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B chloroplastic OS Solanum lycopersicum GN CD4B PE 3 SV 1
blastp_uniprot_sprot sp|Q9FI56|CLPC1_ARATH 1 725 + 725 Gaps:20 82.35 929 90.46 0.0 Chaperone protein ClpC1 chloroplastic OS Arabidopsis thaliana GN CLPC1 PE 1 SV 1
blastp_uniprot_sprot sp|P31541|CLPAA_SOLLC 1 725 + 725 Gaps:21 83.91 926 90.22 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A chloroplastic OS Solanum lycopersicum GN CD4A PE 3 SV 1
blastp_uniprot_sprot sp|Q7F9I1|CLPC1_ORYSJ 1 717 + 717 Gaps:17 82.35 918 89.55 0.0 Chaperone protein ClpC1 chloroplastic OS Oryza sativa subsp. japonica GN CLPC1 PE 2 SV 2
blastp_uniprot_sprot sp|Q2QVG9|CLPC2_ORYSJ 1 715 + 715 Gaps:17 82.05 919 88.59 0.0 Chaperone protein ClpC2 chloroplastic OS Oryza sativa subsp. japonica GN CLPC2 PE 2 SV 2
blastp_uniprot_sprot sp|P46523|CLPA_BRANA 1 725 + 725 Gaps:22 87.30 874 88.07 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog chloroplastic (Fragment) OS Brassica napus GN CLPA PE 2 SV 1
blastp_uniprot_sprot sp|Q9SXJ7|CLPC2_ARATH 1 723 + 723 Gaps:23 80.67 952 85.55 0.0 Chaperone protein ClpC2 chloroplastic OS Arabidopsis thaliana GN CLPC2 PE 2 SV 1
blastp_uniprot_sprot sp|Q53LY0|CLPC3_ORYSJ 2 715 + 714 Gaps:24 76.07 932 74.89 0.0 Chaperone protein ClpC3 chloroplastic OS Oryza sativa subsp. japonica GN CLPC3 PE 2 SV 1
blastp_uniprot_sprot sp|O78410|CLPC_GUITH 1 690 + 690 Gaps:28 82.42 819 75.70 0.0 ATP-dependent Clp protease ATP-binding subunit clpA homolog OS Guillardia theta GN clpC PE 3 SV 1

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 86 86 G3DSA:1.10.1780.10 none none IPR023150
Gene3D 390 626 237 G3DSA:3.40.50.300 none none IPR027417
PANTHER 1 725 725 PTHR11638 none none none
SMART 616 706 91 SM01086 none C-terminal, D2-small domain, of ClpB protein IPR019489
Pfam 41 86 46 PF02861 none Clp amino terminal domain IPR004176
SUPERFAMILY 385 702 318 SSF52540 none none IPR027417
Pfam 616 696 81 PF10431 none C-terminal, D2-small domain, of ClpB protein IPR019489
SMART 165 434 270 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 436 617 182 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Gene3D 237 321 85 G3DSA:1.10.8.60 none none none
Gene3D 126 204 79 G3DSA:3.40.50.300 none none IPR027417
Gene3D 205 236 32 G3DSA:3.40.50.300 none none IPR027417
Gene3D 627 705 79 G3DSA:1.10.8.60 none none none
Pfam 310 345 36 PF02151 none UvrB/uvrC motif IPR001943
PRINTS 440 458 19 PR00300 none ATP-dependent Clp protease ATP-binding subunit signature IPR001270
PRINTS 514 532 19 PR00300 none ATP-dependent Clp protease ATP-binding subunit signature IPR001270
PRINTS 547 561 15 PR00300 none ATP-dependent Clp protease ATP-binding subunit signature IPR001270
PRINTS 485 503 19 PR00300 none ATP-dependent Clp protease ATP-binding subunit signature IPR001270
ProSitePatterns 470 488 19 PS00871 none Chaperonins clpA/B signature 2. IPR028299
ProSiteProfiles 310 345 36 PS50151 none UVR domain profile. IPR001943
PANTHER 1 725 725 PTHR11638:SF90 none none none
SUPERFAMILY 128 304 177 SSF52540 none none IPR027417
Pfam 435 609 175 PF07724 none AAA domain (Cdc48 subfamily) IPR003959
SUPERFAMILY 29 87 59 SSF81923 none none none
Coils 299 327 29 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting