Protein : Qrob_P0707280.2 Q. robur
Protein Identifier  ? Qrob_P0707280.2 Organism . Name  Quercus robur
Score  42.2 Score Type  egn
Protein Description  (M=1) K14164 - glycyl-tRNA synthetase [EC:6.1.1.14] Code Enzyme  EC:6.1.1.14
Gene Prediction Quality  validated Protein length 

Sequence

Length: 820  
Kegg Orthology  K14164
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004820 glycine-tRNA ligase activity Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).
GO:0006426 glycyl-tRNA aminoacylation The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100246137 5 812 + 808 Gaps:21 77.40 1071 78.77 0.0 glycyl-tRNA synthetase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|rcu:RCOM_1607610 18 812 + 795 Gaps:20 76.24 1069 79.14 0.0 Glycyl-tRNA synthetase 2 chloroplast/mitochondrial precursor putative (EC:6.1.1.14)
blastp_kegg lcl|tcc:TCM_005719 18 812 + 795 Gaps:20 76.10 1071 79.39 0.0 Glycine-tRNA ligases
blastp_kegg lcl|pop:POPTR_0014s04810g 18 812 + 795 Gaps:20 75.60 1078 79.14 0.0 hypothetical protein
blastp_kegg lcl|pxb:103962255 18 812 + 795 Gaps:20 75.88 1074 79.39 0.0 glycine--tRNA ligase 2 chloroplastic/mitochondrial
blastp_kegg lcl|cit:102624803 18 802 + 785 Gaps:20 75.23 1070 78.76 0.0 glycine--tRNA ligase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|fve:101314215 18 812 + 795 Gaps:20 76.53 1065 77.91 0.0 glycine--tRNA ligase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|cam:101514446 18 800 + 783 Gaps:20 74.77 1074 78.08 0.0 glycine--tRNA ligase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|gmx:100787365 18 807 + 790 Gaps:20 73.70 1099 78.77 0.0 glycine--tRNA ligase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|cmo:103498820 18 812 + 795 Gaps:20 76.31 1068 74.23 0.0 glycine--tRNA ligase 2 chloroplastic/mitochondrial
blastp_pdb 1j5w_B 13 202 + 190 none 63.76 298 52.63 5e-66 mol:protein length:298 Glycyl-tRNA synthetase alpha chain
blastp_pdb 1j5w_A 13 202 + 190 none 63.76 298 52.63 5e-66 mol:protein length:298 Glycyl-tRNA synthetase alpha chain
blastp_pdb 3ufg_B 18 192 + 175 Gaps:4 57.56 311 49.16 4e-54 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3ufg_A 18 192 + 175 Gaps:4 57.56 311 49.16 4e-54 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rgl_B 18 192 + 175 Gaps:4 57.56 311 49.16 4e-54 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rgl_A 18 192 + 175 Gaps:4 57.56 311 49.16 4e-54 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rf1_B 18 192 + 175 Gaps:4 57.56 311 49.16 4e-54 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rf1_A 18 192 + 175 Gaps:4 57.56 311 49.16 4e-54 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_uniprot_sprot sp|Q8L785|SYGM2_ARATH 18 807 + 790 Gaps:20 75.91 1067 73.09 0.0 Glycine--tRNA ligase 2 chloroplastic/mitochondrial OS Arabidopsis thaliana GN GLYRS-2 PE 2 SV 1
blastp_uniprot_sprot sp|P0CE22|SYG_CHLTR 18 796 + 779 Gaps:66 80.26 1003 34.78 1e-133 Glycine--tRNA ligase OS Chlamydia trachomatis (strain D/UW-3/Cx) GN glyQS PE 3 SV 1
blastp_uniprot_sprot sp|B0B923|SYG_CHLT2 18 796 + 779 Gaps:66 80.26 1003 34.41 1e-131 Glycine--tRNA ligase OS Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN glyQS PE 3 SV 1
blastp_uniprot_sprot sp|Q9PLC6|SYG_CHLMU 18 796 + 779 Gaps:64 80.26 1003 35.03 5e-131 Glycine--tRNA ligase OS Chlamydia muridarum (strain MoPn / Nigg) GN glyQS PE 3 SV 1
blastp_uniprot_sprot sp|Q9Z6W0|SYG_CHLPN 18 761 + 744 Gaps:61 76.34 1010 34.63 1e-130 Glycine--tRNA ligase OS Chlamydia pneumoniae GN glyQS PE 3 SV 2
blastp_uniprot_sprot sp|A4J7C9|SYGB_DESRM 233 797 + 565 Gaps:27 85.18 695 36.32 2e-113 Glycine--tRNA ligase beta subunit OS Desulfotomaculum reducens (strain MI-1) GN glyS PE 3 SV 1
blastp_uniprot_sprot sp|B8CXH5|SYGB_HALOH 230 805 + 576 Gaps:32 86.59 686 37.21 3e-111 Glycine--tRNA ligase beta subunit OS Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN glyS PE 3 SV 1
blastp_uniprot_sprot sp|B1I1T4|SYGB_DESAP 233 805 + 573 Gaps:34 87.35 688 37.44 7e-109 Glycine--tRNA ligase beta subunit OS Desulforudis audaxviator (strain MP104C) GN glyS PE 3 SV 1
blastp_uniprot_sprot sp|Q3A8N5|SYGB_PELCD 235 798 + 564 Gaps:27 85.32 688 37.14 3e-106 Glycine--tRNA ligase beta subunit OS Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN glyS PE 3 SV 1
blastp_uniprot_sprot sp|Q0AWT6|SYGB_SYNWW 234 805 + 572 Gaps:37 87.06 688 36.56 4e-105 Glycine--tRNA ligase beta subunit OS Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) GN glyS PE 3 SV 1
rpsblast_cdd gnl|CDD|184901 18 796 + 779 Gaps:42 80.30 1000 41.97 0.0 PRK14908 PRK14908 glycyl-tRNA synthetase Provisional.
rpsblast_cdd gnl|CDD|190207 233 759 + 527 Gaps:32 100.00 549 43.72 1e-178 pfam02092 tRNA_synt_2f Glycyl-tRNA synthetase beta subunit.

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 14 198 185 SSF55681 none none none
ProSiteProfiles 18 193 176 PS50861 "KEGG:00970+6.1.1.14" Heterodimeric glycyl-transfer RNA synthetases family profile. IPR006194
Gene3D 17 120 104 G3DSA:3.30.930.10 none none none
PRINTS 73 88 16 PR01044 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit signature IPR002310
PRINTS 158 174 17 PR01044 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit signature IPR002310
PRINTS 50 70 21 PR01044 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit signature IPR002310
PRINTS 24 48 25 PR01044 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit signature IPR002310
SUPERFAMILY 557 673 117 SSF109604 none none none
Gene3D 123 203 81 G3DSA:1.20.58.180 none none none
ProSiteProfiles 567 762 196 PS50861 "KEGG:00970+6.1.1.14" Heterodimeric glycyl-transfer RNA synthetases family profile. IPR006194
PANTHER 18 806 789 PTHR30075:SF3 none none none
Pfam 16 203 188 PF02091 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit IPR002310
PANTHER 18 806 789 PTHR30075 none none none
Pfam 233 548 316 PF02092 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase beta subunit IPR015944
Pfam 560 758 199 PF02092 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase beta subunit IPR015944

1 Localization

Analysis Start End Length
SignalP_EUK 1 22 21

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting