Protein : Qrob_P0707270.2 Q. robur
Protein Identifier  ? Qrob_P0707270.2 Organism . Name  Quercus robur
Score  64.4 Score Type  egn
Protein Description  (M=2) 6.1.1.14 - Glycine--tRNA ligase. Code Enzyme  EC:6.1.1.14
Gene Prediction Quality  validated Protein length 

Sequence

Length: 190  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004820 glycine-tRNA ligase activity Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).
GO:0006426 glycyl-tRNA aminoacylation The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103962255 1 180 + 180 Gaps:15 16.67 1074 76.54 9e-81 glycine--tRNA ligase 2 chloroplastic/mitochondrial
blastp_kegg lcl|cic:CICLE_v100187012m 1 180 + 180 Gaps:9 45.93 381 73.71 3e-78 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1607610 1 180 + 180 Gaps:10 16.28 1069 74.71 8e-77 Glycyl-tRNA synthetase 2 chloroplast/mitochondrial precursor putative (EC:6.1.1.14)
blastp_kegg lcl|pmum:103331660 1 180 + 180 Gaps:13 19.32 906 77.14 1e-76 glycine--tRNA ligase 2 chloroplastic/mitochondrial
blastp_kegg lcl|tcc:TCM_005719 1 178 + 178 Gaps:12 16.25 1071 74.71 1e-76 Glycine-tRNA ligases
blastp_kegg lcl|pop:POPTR_0014s04810g 1 180 + 180 Gaps:25 16.98 1078 74.86 3e-75 hypothetical protein
blastp_kegg lcl|cit:102624803 1 180 + 180 Gaps:9 16.36 1070 73.71 1e-74 glycine--tRNA ligase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|fve:101314215 1 180 + 180 Gaps:10 15.96 1065 75.88 3e-74 glycine--tRNA ligase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|vvi:100246137 1 178 + 178 Gaps:22 16.25 1071 75.29 2e-73 glycyl-tRNA synthetase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|cmo:103498820 1 182 + 182 Gaps:27 16.39 1068 73.71 7e-71 glycine--tRNA ligase 2 chloroplastic/mitochondrial
blastp_pdb 3ufg_B 71 180 + 110 none 35.37 311 53.64 9e-34 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3ufg_A 71 180 + 110 none 35.37 311 53.64 9e-34 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rgl_B 71 180 + 110 none 35.37 311 53.64 9e-34 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rgl_A 71 180 + 110 none 35.37 311 53.64 9e-34 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rf1_B 71 180 + 110 none 35.37 311 53.64 9e-34 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 3rf1_A 71 180 + 110 none 35.37 311 53.64 9e-34 mol:protein length:311 Glycyl-tRNA synthetase alpha subunit
blastp_pdb 1j5w_B 81 178 + 98 none 32.89 298 55.10 8e-32 mol:protein length:298 Glycyl-tRNA synthetase alpha chain
blastp_pdb 1j5w_A 81 178 + 98 none 32.89 298 55.10 8e-32 mol:protein length:298 Glycyl-tRNA synthetase alpha chain
blastp_uniprot_sprot sp|Q8L785|SYGM2_ARATH 1 180 + 180 Gaps:12 16.12 1067 70.35 2e-68 Glycine--tRNA ligase 2 chloroplastic/mitochondrial OS Arabidopsis thaliana GN GLYRS-2 PE 2 SV 1
blastp_uniprot_sprot sp|B8IZ95|SYGA_DESDA 81 182 + 102 none 34.93 292 65.69 1e-40 Glycine--tRNA ligase alpha subunit OS Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|B2V9P8|SYGA_SULSY 80 180 + 101 none 34.01 297 65.35 2e-40 Glycine--tRNA ligase alpha subunit OS Sulfurihydrogenibium sp. (strain YO3AOP1) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|B8DPG0|SYGA_DESVM 81 182 + 102 none 35.05 291 64.71 3e-40 Glycine--tRNA ligase alpha subunit OS Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|A1VCW8|SYGA_DESVV 81 182 + 102 none 35.29 289 65.69 6e-40 Glycine--tRNA ligase alpha subunit OS Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|Q72AU2|SYGA_DESVH 81 182 + 102 none 35.29 289 65.69 6e-40 Glycine--tRNA ligase alpha subunit OS Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|C0MDQ4|SYGA_STRS7 80 180 + 101 none 33.33 303 61.39 7e-40 Glycine--tRNA ligase alpha subunit OS Streptococcus equi subsp. zooepidemicus (strain H70) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|B4U1J1|SYGA_STREM 80 180 + 101 none 33.33 303 61.39 7e-40 Glycine--tRNA ligase alpha subunit OS Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|C0M953|SYGA_STRE4 80 180 + 101 none 33.33 303 61.39 7e-40 Glycine--tRNA ligase alpha subunit OS Streptococcus equi subsp. equi (strain 4047) GN glyQ PE 3 SV 1
blastp_uniprot_sprot sp|C6BV68|SYGA_DESAD 81 181 + 101 none 34.83 290 60.40 9e-40 Glycine--tRNA ligase alpha subunit OS Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN glyQ PE 3 SV 1
rpsblast_cdd gnl|CDD|181790 76 180 + 105 none 37.10 283 61.90 5e-51 PRK09348 glyQ glycyl-tRNA synthetase subunit alpha Validated.
rpsblast_cdd gnl|CDD|184901 76 180 + 105 none 10.50 1000 62.86 8e-50 PRK14908 PRK14908 glycyl-tRNA synthetase Provisional.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 72 182 111 G3DSA:3.30.930.10 none none none
Phobius 20 189 170 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 14 19 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 2 13 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 80 184 105 SSF55681 none none none
PANTHER 80 178 99 PTHR30075:SF3 none none none
ProSiteProfiles 80 189 110 PS50861 "KEGG:00970+6.1.1.14" Heterodimeric glycyl-transfer RNA synthetases family profile. IPR006194
PRINTS 133 148 16 PR01044 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit signature IPR002310
PRINTS 154 174 21 PR01044 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit signature IPR002310
PANTHER 80 178 99 PTHR30075 none none none
Pfam 81 181 101 PF02091 "KEGG:00970+6.1.1.14" Glycyl-tRNA synthetase alpha subunit IPR002310

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting