Protein : Qrob_P0705100.2 Q. robur
Protein Identifier  ? Qrob_P0705100.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=14) 2.7.7.48 - RNA-directed RNA polymerase. Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1003  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262811 1 1000 + 1000 Gaps:17 89.83 1121 68.02 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|vvi:100268011 1 1000 + 1000 Gaps:16 90.71 1109 67.50 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|pop:POPTR_0010s11560g 1 998 + 998 Gaps:20 89.90 1119 64.81 0.0 POPTRDRAFT_231683 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s13550g 1 994 + 994 Gaps:23 89.23 1133 66.27 0.0 POPTRDRAFT_820696 RNA-directed RNA Polymerase family protein
blastp_kegg lcl|pop:POPTR_0008s13520g 1 992 + 992 Gaps:9 86.48 1139 65.89 0.0 POPTRDRAFT_564678 hypothetical protein
blastp_kegg lcl|cit:102608479 1 998 + 998 Gaps:29 89.66 1132 66.40 0.0 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|pper:PRUPE_ppa021500mg 1 994 + 994 Gaps:17 90.67 1104 66.03 0.0 hypothetical protein
blastp_kegg lcl|pxb:103947128 1 1000 + 1000 Gaps:15 89.71 1118 65.80 0.0 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|mdm:103444585 1 1000 + 1000 Gaps:15 89.45 1119 65.43 0.0 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|pper:PRUPE_ppa000562mg 1 994 + 994 Gaps:26 90.59 1095 66.03 0.0 hypothetical protein
blastp_pdb 2j7o_A 382 715 + 334 Gaps:50 34.83 1022 24.72 8e-19 mol:protein length:1022 RNA DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_B 382 715 + 334 Gaps:50 34.83 1022 24.72 8e-19 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_A 382 715 + 334 Gaps:50 34.83 1022 24.72 8e-19 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 1 1000 + 1000 Gaps:43 89.88 1107 60.80 0.0 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 260 994 + 735 Gaps:23 96.49 740 63.87 0.0 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 1 996 + 996 Gaps:60 89.32 1133 42.39 0.0 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 5 1000 + 996 Gaps:74 88.73 1136 40.67 0.0 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 1 993 + 993 Gaps:84 86.87 1196 38.21 0.0 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 92 993 + 902 Gaps:71 75.78 1218 39.22 0.0 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|O14227|RDR1_SCHPO 250 997 + 748 Gaps:62 62.39 1215 32.32 1e-107 RNA-dependent RNA polymerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rdr1 PE 1 SV 1
blastp_uniprot_sprot sp|O82190|RDR3_ARATH 319 862 + 544 Gaps:135 60.99 992 25.79 3e-25 Probable RNA-dependent RNA polymerase 3 OS Arabidopsis thaliana GN RDR3 PE 3 SV 2
blastp_uniprot_sprot sp|O82189|RDR4_ARATH 320 834 + 515 Gaps:132 61.17 927 26.10 2e-21 Probable RNA-dependent RNA polymerase 4 OS Arabidopsis thaliana GN RDR4 PE 3 SV 2
blastp_uniprot_sprot sp|O82188|RDR5_ARATH 325 853 + 529 Gaps:135 59.57 977 24.91 5e-21 Probable RNA-dependent RNA polymerase 5 OS Arabidopsis thaliana GN RDR5 PE 2 SV 2
rpsblast_cdd gnl|CDD|203192 260 836 + 577 Gaps:89 98.43 508 48.40 1e-149 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 26 999 + 974 Gaps:84 86.11 1145 38.34 0.0 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 162 994 833 PTHR23079 none none IPR007855
PANTHER 162 994 833 PTHR23079:SF1 none none none
Pfam 260 837 578 PF05183 none RNA dependent RNA polymerase IPR007855

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting