Protein : Qrob_P0705030.2 Q. robur
Protein Identifier  ? Qrob_P0705030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=14) 2.7.7.48 - RNA-directed RNA polymerase. Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 629  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262811 1 625 + 625 Gaps:82 61.37 1121 56.98 5e-128 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|pop:POPTR_0008s13520g 2 618 + 617 Gaps:72 56.63 1139 57.83 2e-127 POPTRDRAFT_564678 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s11560g 1 624 + 624 Gaps:77 58.36 1119 56.81 1e-124 POPTRDRAFT_231683 hypothetical protein
blastp_kegg lcl|mdm:103444585 2 622 + 621 Gaps:69 57.73 1119 59.29 1e-122 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|vvi:100268011 1 624 + 624 Gaps:81 61.68 1109 55.85 3e-121 RNA-dependent RNA polymerase 1-like
blastp_kegg lcl|mdm:103444586 2 620 + 619 Gaps:71 59.13 1084 58.35 3e-121 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|pmum:103320955 2 620 + 619 Gaps:72 58.79 1104 56.55 9e-121 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|pmum:103323062 1 622 + 622 Gaps:92 58.79 1143 54.02 1e-120 probable RNA-dependent RNA polymerase 1
blastp_kegg lcl|pper:PRUPE_ppa021500mg 2 620 + 619 Gaps:72 58.79 1104 56.86 5e-120 hypothetical protein
blastp_kegg lcl|pmum:103321444 1 620 + 620 Gaps:91 60.16 1112 55.01 1e-119 probable RNA-dependent RNA polymerase 1
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 1 624 + 624 Gaps:95 63.60 1107 49.01 3e-96 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 167 620 + 454 Gaps:3 55.00 740 57.74 4e-87 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 2 621 + 620 Gaps:112 57.63 1133 36.91 3e-48 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 2 619 + 618 Gaps:107 57.04 1136 35.03 3e-43 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 164 619 + 456 Gaps:22 34.48 1218 38.81 8e-38 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 14 619 + 606 Gaps:119 54.60 1196 31.24 2e-33 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|O14227|RDR1_SCHPO 160 623 + 464 Gaps:23 33.50 1215 32.68 1e-23 RNA-dependent RNA polymerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rdr1 PE 1 SV 1
rpsblast_cdd gnl|CDD|203192 167 462 + 296 Gaps:21 42.52 508 48.61 2e-31 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 106 626 + 521 Gaps:54 43.41 1145 36.82 4e-54 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 167 322 156 PF05183 none RNA dependent RNA polymerase IPR007855
Pfam 364 462 99 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 366 620 255 PTHR23079 none none IPR007855
PANTHER 366 620 255 PTHR23079:SF1 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting