Protein : Qrob_P0703480.2 Q. robur
Protein Identifier  ? Qrob_P0703480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12321//PTHR12321:SF37 - CPG BINDING PROTEIN // SUBFAMILY NOT NAMED (PTHR12321:SF37) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 237  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0042393 histone binding Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of plant and animal chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100793126 1 235 + 235 Gaps:2 98.74 238 88.51 1e-142 PHD finger protein ALFIN-LIKE 1-like
blastp_kegg lcl|pvu:PHAVU_010G000500g 1 235 + 235 Gaps:5 99.59 241 85.83 4e-141 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s12420g 1 236 + 236 Gaps:1 99.16 237 87.23 1e-140 POPTRDRAFT_750025 PHD finger family protein
blastp_kegg lcl|cit:102609983 1 236 + 236 Gaps:1 99.16 239 91.14 5e-140 PHD finger protein ALFIN-LIKE 1-like
blastp_kegg lcl|cmo:103501445 1 235 + 235 Gaps:2 98.34 241 79.75 5e-140 PHD finger protein ALFIN-LIKE 2-like
blastp_kegg lcl|csv:101226560 1 235 + 235 Gaps:2 98.34 241 78.48 1e-138 PHD finger protein ALFIN-LIKE 1-like
blastp_kegg lcl|pmum:103341835 1 236 + 236 Gaps:1 99.16 239 89.87 1e-137 PHD finger protein ALFIN-LIKE 1-like
blastp_kegg lcl|pper:PRUPE_ppa010710mg 1 236 + 236 Gaps:1 99.16 239 89.87 1e-137 hypothetical protein
blastp_kegg lcl|tcc:TCM_021689 1 236 + 236 Gaps:1 99.16 239 88.61 2e-137 Alfin-like 1
blastp_kegg lcl|pop:POPTR_0006s10180g 1 235 + 235 none 98.74 238 88.94 2e-137 POPTRDRAFT_560917 PHD finger family protein
blastp_pdb 1we9_A 184 233 + 50 none 78.12 64 74.00 3e-21 mol:protein length:64 PHD finger family protein
blastp_pdb 3qzv_A 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 Nucleosome-remodeling factor subunit BPTF
blastp_pdb 2fsa_C 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_pdb 2fsa_B 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_pdb 2fsa_A 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_pdb 2f6n_B 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_pdb 2f6n_A 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_pdb 2f6j_C 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_pdb 2f6j_B 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_pdb 2f6j_A 187 230 + 44 none 25.29 174 50.00 6e-10 mol:protein length:174 bromodomain PHD finger transcription factor
blastp_uniprot_sprot sp|Q9FFF5|ALFL1_ARATH 2 236 + 235 Gaps:2 98.34 241 78.48 6e-118 PHD finger protein ALFIN-LIKE 1 OS Arabidopsis thaliana GN AL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q75IR6|ALFL1_ORYSJ 3 236 + 234 Gaps:4 92.25 258 67.23 2e-114 PHD finger protein ALFIN-LIKE 1 OS Oryza sativa subsp. japonica GN Os05g0163100 PE 2 SV 1
blastp_uniprot_sprot sp|A2Y0Q2|ALFL1_ORYSI 3 236 + 234 Gaps:4 92.25 258 67.23 2e-114 PHD finger protein ALFIN-LIKE 1 OS Oryza sativa subsp. indica GN OsI_18576 PE 3 SV 1
blastp_uniprot_sprot sp|Q8H383|ALFL2_ORYSJ 1 236 + 236 Gaps:6 97.54 244 73.95 5e-114 PHD finger protein ALFIN-LIKE 2 OS Oryza sativa subsp. japonica GN Os07g0233300 PE 2 SV 1
blastp_uniprot_sprot sp|B8B8I3|ALFL2_ORYSI 1 236 + 236 Gaps:6 97.54 244 73.95 5e-114 PHD finger protein ALFIN-LIKE 2 OS Oryza sativa subsp. indica GN OsI_25444 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SRM4|ALFL2_ARATH 1 236 + 236 Gaps:5 97.97 246 78.01 1e-109 PHD finger protein ALFIN-LIKE 2 OS Arabidopsis thaliana GN AL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q84TV4|ALFL3_ORYSJ 1 230 + 230 Gaps:1 92.71 247 71.62 3e-109 PHD finger protein ALFIN-LIKE 3 OS Oryza sativa subsp. japonica GN Os03g0818300 PE 2 SV 1
blastp_uniprot_sprot sp|B8AMA8|ALFL3_ORYSI 1 230 + 230 Gaps:1 92.71 247 71.62 3e-109 PHD finger protein ALFIN-LIKE 3 OS Oryza sativa subsp. indica GN OsI_14081 PE 3 SV 2
blastp_uniprot_sprot sp|Q7XUW3|ALFL4_ORYSJ 6 236 + 231 Gaps:11 94.53 256 55.79 2e-90 PHD finger protein ALFIN-LIKE 4 OS Oryza sativa subsp. japonica GN Os04g0444900 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M2B4|ALFL3_ARATH 4 235 + 232 Gaps:9 96.40 250 63.49 3e-90 PHD finger protein ALFIN-LIKE 3 OS Arabidopsis thaliana GN AL3 PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 183 231 49 SM00249 none PHD zinc finger IPR001965
SUPERFAMILY 171 233 63 SSF57903 none none IPR011011
ProSitePatterns 184 230 47 PS01359 none Zinc finger PHD-type signature. IPR019786
Pfam 6 134 129 PF12165 none Domain of unknown function (DUF3594) IPR021998
PANTHER 171 235 65 PTHR12321 none none none
Phobius 1 85 85 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 86 107 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 181 233 53 PS50016 none Zinc finger PHD-type profile. IPR019787
Pfam 184 232 49 PF00628 none PHD-finger IPR019787
PANTHER 8 133 126 PTHR12321:SF37 none none none
PANTHER 171 235 65 PTHR12321:SF37 none none none
PANTHER 8 133 126 PTHR12321 none none none
Gene3D 176 233 58 G3DSA:3.30.40.10 none none IPR013083
Phobius 108 236 129 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting