Protein : Qrob_P0699140.2 Q. robur
Protein Identifier  ? Qrob_P0699140.2 Organism . Name  Quercus robur
Score  83.4 Score Type  egn
Protein Description  (M=3) 3.1.30.1 - Aspergillus nuclease S(1). Code Enzyme  EC:3.1.30.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 185  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0016788 hydrolase activity, acting on ester bonds Catalysis of the hydrolysis of any ester bond.
GO:0004519 endonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
GO:0006308 DNA catabolic process The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100101913 5 184 + 180 Gaps:21 65.26 308 69.15 1e-97 EN1 endonuclease
blastp_kegg lcl|pvu:PHAVU_006G190700g 5 184 + 180 Gaps:21 65.26 308 70.15 4e-96 hypothetical protein
blastp_kegg lcl|tcc:TCM_029962 5 184 + 180 Gaps:21 66.12 304 68.16 6e-96 Bifunctional nuclease i
blastp_kegg lcl|gmx:100779416 5 184 + 180 Gaps:21 61.09 329 68.16 1e-95 endonuclease 1-like
blastp_kegg lcl|cic:CICLE_v10016240mg 5 184 + 180 Gaps:21 73.63 273 67.16 3e-93 hypothetical protein
blastp_kegg lcl|cit:102622496 5 184 + 180 Gaps:21 66.78 301 67.16 6e-93 endonuclease 1-like
blastp_kegg lcl|vvi:100243458 5 184 + 180 Gaps:21 65.47 307 66.17 4e-92 nuclease S1-like
blastp_kegg lcl|sly:100037736 5 178 + 174 Gaps:21 64.57 302 66.15 6e-91 tbn1 endonuclease precursor-like
blastp_kegg lcl|rcu:RCOM_1062930 13 184 + 172 Gaps:21 67.48 286 68.39 7e-90 Nuclease PA3 putative (EC:3.1.30.1)
blastp_kegg lcl|pop:POPTR_0011s04430g 12 184 + 173 Gaps:21 64.24 302 68.56 1e-89 POPTRDRAFT_771158 endonuclease family protein
blastp_pdb 1ak0_A 16 174 + 159 Gaps:40 67.04 270 28.18 2e-13 mol:protein length:270 P1 NUCLEASE
blastp_uniprot_sprot sp|Q9SXA6|ENDO1_ARATH 5 175 + 171 Gaps:21 62.95 305 62.50 1e-85 Endonuclease 1 OS Arabidopsis thaliana GN ENDO1 PE 1 SV 1
blastp_uniprot_sprot sp|F4JJL0|ENDO4_ARATH 5 178 + 174 Gaps:24 65.55 299 46.94 4e-56 Endonuclease 4 OS Arabidopsis thaliana GN ENDO4 PE 3 SV 1
blastp_uniprot_sprot sp|Q9C9G4|ENDO2_ARATH 5 174 + 170 Gaps:23 65.86 290 45.55 1e-51 Endonuclease 2 OS Arabidopsis thaliana GN ENDO2 PE 1 SV 1
blastp_uniprot_sprot sp|F4JJL3|ENDO5_ARATH 5 173 + 169 Gaps:24 64.53 296 45.03 4e-50 Endonuclease 5 OS Arabidopsis thaliana GN ENDO5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LDW6|ENDO3_ARATH 13 174 + 162 Gaps:24 62.59 294 42.39 6e-43 Endonuclease 3 OS Arabidopsis thaliana GN ENDO3 PE 2 SV 1
blastp_uniprot_sprot sp|P24021|NUS1_ASPOR 16 172 + 157 Gaps:33 62.02 287 29.78 1e-13 Nuclease S1 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN nucS PE 1 SV 2
blastp_uniprot_sprot sp|P24504|NUP3_PENSQ 16 174 + 159 Gaps:40 67.04 270 28.18 2e-13 Nuclease PA3 OS Penicillium sp. PE 1 SV 1
blastp_uniprot_sprot sp|P24289|NUP1_PENCI 16 174 + 159 Gaps:40 67.04 270 28.18 7e-13 Nuclease P1 OS Penicillium citrinum PE 1 SV 1
rpsblast_cdd gnl|CDD|202182 5 174 + 170 Gaps:19 72.11 251 41.44 1e-53 pfam02265 S1-P1_nuclease S1/P1 Nuclease. This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity.
rpsblast_cdd gnl|CDD|211382 4 173 + 170 Gaps:18 72.29 249 33.89 2e-36 cd11010 S1-P1_nuclease S1/P1 nucleases and related enzymes. This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded it may also introduce single-stranded breaks in double-stranded DNA or RNA or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 144 175 32 G3DSA:1.10.575.10 none none IPR008947
Gene3D 12 133 122 G3DSA:1.10.575.10 none none IPR008947
Pfam 5 173 169 PF02265 none S1/P1 Nuclease IPR003154
SUPERFAMILY 11 171 161 SSF48537 none none IPR008947

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting