Protein : Qrob_P0694880.2 Q. robur
Protein Identifier  ? Qrob_P0694880.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0331//KOG0350//KOG0354//KOG0701 - ATP-dependent RNA helicase [RNA processing and modification]. // DEAD-box ATP-dependent RNA helicase [RNA processing and modification]. // DEAD-box like helicase [General function prediction only]. // dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 804  
Kegg Orthology  K11592
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103318814 3 763 + 761 Gaps:16 54.80 1396 61.96 0.0 endoribonuclease Dicer homolog 2
blastp_kegg lcl|pxb:103951841 3 746 + 744 Gaps:14 53.33 1410 61.84 0.0 endoribonuclease Dicer homolog 2
blastp_kegg lcl|pxb:103932475 3 746 + 744 Gaps:14 53.83 1397 61.84 0.0 endoribonuclease Dicer homolog 2-like
blastp_kegg lcl|pxb:103932471 3 746 + 744 Gaps:14 53.83 1397 61.84 0.0 endoribonuclease Dicer homolog 2-like
blastp_kegg lcl|mdm:103434284 3 746 + 744 Gaps:14 53.83 1397 61.84 0.0 endoribonuclease Dicer homolog 2
blastp_kegg lcl|cic:CICLE_v10010911mg 3 769 + 767 Gaps:20 55.17 1401 58.86 0.0 hypothetical protein
blastp_kegg lcl|cit:102617691 3 769 + 767 Gaps:20 55.17 1401 58.73 0.0 endoribonuclease Dicer homolog 2-like
blastp_kegg lcl|pper:PRUPE_ppa000240mg 3 769 + 767 Gaps:78 55.90 1415 58.53 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10010912mg 3 769 + 767 Gaps:20 55.37 1396 57.05 0.0 hypothetical protein
blastp_kegg lcl|fve:101310243 3 773 + 771 Gaps:33 54.99 1433 56.22 0.0 endoribonuclease Dicer homolog 2-like
blastp_pdb 2kou_A 393 475 + 83 Gaps:8 89.22 102 35.16 2e-09 mol:protein length:102 Dicer-like protein 4
blastp_pdb 3tbk_A 262 342 + 81 Gaps:1 14.77 555 35.37 4e-08 mol:protein length:555 RIG-I Helicase Domain
blastp_pdb 1wp9_F 244 341 + 98 Gaps:5 20.04 494 33.33 3e-07 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_E 244 341 + 98 Gaps:5 20.04 494 33.33 3e-07 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_D 244 341 + 98 Gaps:5 20.04 494 33.33 3e-07 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_C 244 341 + 98 Gaps:5 20.04 494 33.33 3e-07 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_B 244 341 + 98 Gaps:5 20.04 494 33.33 3e-07 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 1wp9_A 244 341 + 98 Gaps:5 20.04 494 33.33 3e-07 mol:protein length:494 ATP-dependent RNA helicase putative
blastp_pdb 3tmi_A 262 385 + 124 Gaps:13 16.26 695 30.09 1e-06 mol:protein length:695 ATP-dependent RNA helicase DDX58
blastp_pdb 2ykg_A 262 385 + 124 Gaps:13 16.24 696 30.09 1e-06 mol:protein length:696 PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 3 763 + 761 Gaps:19 55.33 1388 52.21 0.0 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 3 749 + 747 Gaps:48 53.12 1410 43.79 5e-168 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 3 749 + 747 Gaps:69 52.29 1377 42.64 3e-146 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 3 738 + 736 Gaps:109 46.77 1657 29.03 4e-62 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 19 761 + 743 Gaps:107 44.65 1702 29.74 3e-59 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 3 629 + 627 Gaps:106 37.76 1883 28.55 9e-59 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 3 629 + 627 Gaps:98 37.45 1909 27.55 3e-57 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 3 777 + 775 Gaps:113 50.27 1651 24.94 4e-52 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 19 759 + 741 Gaps:110 48.81 1637 25.03 3e-50 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q09884|DCR1_SCHPO 3 494 + 492 Gaps:80 35.08 1374 29.05 2e-30 Protein Dicer OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN dcr1 PE 1 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 212 377 166 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
ProSiteProfiles 398 482 85 PS51327 none Dicer double-stranded RNA-binding fold domain profile. IPR005034
Pfam 398 475 78 PF03368 none Dicer dimerisation domain IPR005034
SUPERFAMILY 665 720 56 SSF101690 none none IPR003100
SUPERFAMILY 17 62 46 SSF52540 none none IPR027417
SUPERFAMILY 209 341 133 SSF52540 none none IPR027417
ProSiteProfiles 667 764 98 PS50821 none PAZ domain profile. IPR003100
SMART 243 330 88 SM00490 none helicase superfamily c-terminal domain IPR001650
Gene3D 220 346 127 G3DSA:3.40.50.300 none none IPR027417
PANTHER 3 737 735 PTHR14950:SF19 none none none
PANTHER 3 737 735 PTHR14950 none none none
Pfam 269 327 59 PF00271 none Helicase conserved C-terminal domain IPR001650

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting