Protein : Qrob_P0687160.2 Q. robur
Protein Identifier  ? Qrob_P0687160.2 Organism . Name  Quercus robur
Score  81.1 Score Type  egn
Protein Description  (M=1) 6.3.4.3 - Formate--tetrahydrofolate ligase. Code Enzyme  EC:6.3.4.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 637  
Kegg Orthology  K01938
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0009396 folic acid-containing compound biosynthetic process The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
GO:0004329 formate-tetrahydrofolate ligase activity Catalysis of the reaction: ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s04800g 1 636 + 636 none 100.00 636 93.55 0.0 POPTRDRAFT_829297 10-formyltetrahydrofolate synthetase family protein
blastp_kegg lcl|pper:PRUPE_ppa002733mg 2 636 + 635 none 99.37 639 92.44 0.0 hypothetical protein
blastp_kegg lcl|pmum:103327220 1 636 + 636 Gaps:3 93.15 686 92.18 0.0 formate--tetrahydrofolate ligase
blastp_kegg lcl|pop:POPTR_0003s21590g 1 636 + 636 none 100.00 636 93.55 0.0 POPTRDRAFT_711662 10-formyltetrahydrofolate synthetase family protein
blastp_kegg lcl|vvi:100255218 2 636 + 635 none 99.69 637 91.81 0.0 formate--tetrahydrofolate ligase-like
blastp_kegg lcl|fve:101291704 1 636 + 636 none 100.00 636 91.35 0.0 formate--tetrahydrofolate ligase-like
blastp_kegg lcl|pxb:103963993 2 636 + 635 none 92.97 683 93.23 0.0 formate--tetrahydrofolate ligase
blastp_kegg lcl|cmo:103492486 1 636 + 636 none 100.00 636 92.77 0.0 formate--tetrahydrofolate ligase
blastp_kegg lcl|cic:CICLE_v10014585mg 1 636 + 636 none 100.00 636 91.82 0.0 hypothetical protein
blastp_kegg lcl|cit:102616080 1 636 + 636 none 100.00 636 91.82 0.0 formate--tetrahydrofolate ligase-like
blastp_pdb 3sin_B 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3sin_A 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3rbo_B 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3rbo_A 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3qus_B 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3qus_A 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3qb6_B 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3qb6_A 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3pzx_B 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_pdb 3pzx_A 13 635 + 623 Gaps:69 99.82 557 51.80 5e-172 mol:protein length:557 Formate--tetrahydrofolate ligase
blastp_uniprot_sprot sp|P28723|FTHS_SPIOL 3 636 + 634 none 99.53 637 88.80 0.0 Formate--tetrahydrofolate ligase OS Spinacia oleracea PE 1 SV 3
blastp_uniprot_sprot sp|Q9SPK5|FTHS_ARATH 4 636 + 633 none 99.84 634 87.99 0.0 Formate--tetrahydrofolate ligase OS Arabidopsis thaliana GN THFS PE 1 SV 1
blastp_uniprot_sprot sp|P11586|C1TC_HUMAN 10 635 + 626 Gaps:3 66.84 935 67.52 0.0 C-1-tetrahydrofolate synthase cytoplasmic OS Homo sapiens GN MTHFD1 PE 1 SV 3
blastp_uniprot_sprot sp|P27653|C1TC_RAT 9 635 + 627 Gaps:3 66.95 935 66.45 0.0 C-1-tetrahydrofolate synthase cytoplasmic OS Rattus norvegicus GN Mthfd1 PE 1 SV 3
blastp_uniprot_sprot sp|Q5R8P0|C1TC_PONAB 10 635 + 626 Gaps:3 66.84 935 67.04 0.0 C-1-tetrahydrofolate synthase cytoplasmic OS Pongo abelii GN MTHFD1 PE 2 SV 3
blastp_uniprot_sprot sp|Q922D8|C1TC_MOUSE 9 635 + 627 Gaps:3 66.95 935 67.09 0.0 C-1-tetrahydrofolate synthase cytoplasmic OS Mus musculus GN Mthfd1 PE 1 SV 4
blastp_uniprot_sprot sp|Q6UB35|C1TM_HUMAN 9 635 + 627 Gaps:3 64.01 978 66.77 0.0 Monofunctional C1-tetrahydrofolate synthase mitochondrial OS Homo sapiens GN MTHFD1L PE 1 SV 1
blastp_uniprot_sprot sp|Q0VCR7|C1TM_BOVIN 9 635 + 627 Gaps:3 64.21 975 65.97 0.0 Monofunctional C1-tetrahydrofolate synthase mitochondrial OS Bos taurus GN MTHFD1L PE 2 SV 2
blastp_uniprot_sprot sp|Q3V3R1|C1TM_MOUSE 9 635 + 627 Gaps:3 64.07 977 66.77 0.0 Monofunctional C1-tetrahydrofolate synthase mitochondrial OS Mus musculus GN Mthfd1l PE 1 SV 2
blastp_uniprot_sprot sp|Q8WZJ7|C1TC_SCHPO 6 636 + 631 Gaps:13 68.09 937 62.70 0.0 C-1-tetrahydrofolate synthase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC839.16 PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 19 166 148 SSF52540 none none IPR027417
SUPERFAMILY 219 633 415 SSF52540 none none IPR027417
Gene3D 316 521 206 G3DSA:3.40.50.300 none none IPR027417
Gene3D 29 144 116 G3DSA:3.40.50.300 none none IPR027417
ProSitePatterns 399 410 12 PS00722 "KEGG:00670+6.3.4.3","KEGG:00720+6.3.4.3","MetaCyc:PWY-1722","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3841","UniPathway:UPA00193" Formate--tetrahydrofolate ligase signature 2. IPR020628
PANTHER 8 636 629 PTHR10025 none none none
Gene3D 524 611 88 G3DSA:3.10.410.10 none none none
Gene3D 145 168 24 G3DSA:3.30.1510.10 none none none
Gene3D 221 315 95 G3DSA:3.30.1510.10 none none none
Pfam 17 636 620 PF01268 "KEGG:00670+6.3.4.3","KEGG:00720+6.3.4.3","MetaCyc:PWY-1722","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3841","UniPathway:UPA00193" Formate--tetrahydrofolate ligase IPR000559
ProSitePatterns 119 129 11 PS00721 "KEGG:00670+6.3.4.3","KEGG:00720+6.3.4.3","MetaCyc:PWY-1722","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3841","UniPathway:UPA00193" Formate--tetrahydrofolate ligase signature 1. IPR020628

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting