Protein : Qrob_P0685080.2 Q. robur
Protein Identifier  ? Qrob_P0685080.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) 6.1.1.11 - Serine--tRNA ligase. Code Enzyme  EC:6.1.1.11
Gene Prediction Quality  validated Protein length 

Sequence

Length: 254  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004828 serine-tRNA ligase activity Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser).
GO:0006434 seryl-tRNA aminoacylation The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0005s09720g 207 250 + 44 Gaps:4 10.74 447 72.92 3e-13 POPTRDRAFT_716082 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_910837 210 248 + 39 none 8.99 434 82.05 4e-13 seryl-tRNA synthetase
blastp_kegg lcl|ehx:EMIHUDRAFT_421500 207 250 + 44 Gaps:4 8.82 544 68.75 4e-13 Seryl-tRNA synthetase
blastp_kegg lcl|eus:EUTSA_v10004203mg 210 248 + 39 none 8.65 451 79.49 5e-13 hypothetical protein
blastp_kegg lcl|mpp:MICPUCDRAFT_44315 207 244 + 38 Gaps:4 10.99 382 73.81 5e-13 hypothetical protein
blastp_kegg lcl|ppp:PHYPADRAFT_115448 206 250 + 45 Gaps:4 10.56 464 67.35 7e-13 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1564380 207 250 + 44 Gaps:4 10.74 447 70.83 7e-13 seryl-tRNA synthetase putative (EC:6.1.1.11)
blastp_kegg lcl|cmo:103502550 207 250 + 44 Gaps:4 10.71 448 70.83 7e-13 serine--tRNA ligase
blastp_kegg lcl|ppp:PHYPADRAFT_137980 206 250 + 45 Gaps:4 10.86 451 67.35 8e-13 hypothetical protein
blastp_kegg lcl|vvi:100261399 207 250 + 44 Gaps:4 10.74 447 70.83 8e-13 seryl-tRNA synthetase-like
blastp_pdb 3lss_B 209 250 + 42 none 8.68 484 69.05 2e-13 mol:protein length:484 Seryl-tRNA synthetase
blastp_pdb 3lss_A 209 250 + 42 none 8.68 484 69.05 2e-13 mol:protein length:484 Seryl-tRNA synthetase
blastp_pdb 3lsq_B 209 250 + 42 none 8.68 484 69.05 2e-13 mol:protein length:484 Seryl-tRNA synthetase
blastp_pdb 3lsq_A 209 250 + 42 none 8.68 484 69.05 2e-13 mol:protein length:484 Seryl-tRNA synthetase
blastp_pdb 3qo5_A 210 244 + 35 none 7.22 485 71.43 2e-11 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3qo8_A 210 244 + 35 none 7.22 485 71.43 2e-11 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3qo7_A 210 244 + 35 none 7.22 485 71.43 2e-11 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3qne_A 210 244 + 35 none 7.22 485 71.43 2e-11 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_F 207 244 + 38 Gaps:4 8.05 522 59.52 2e-10 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_E 207 244 + 38 Gaps:4 8.05 522 59.52 2e-10 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_uniprot_sprot sp|O81983|SYS_HELAN 207 244 + 38 Gaps:4 9.59 438 76.19 5e-14 Serine--tRNA ligase OS Helianthus annuus PE 2 SV 1
blastp_uniprot_sprot sp|Q39230|SYS_ARATH 210 248 + 39 none 8.65 451 79.49 7e-14 Serine--tRNA ligase OS Arabidopsis thaliana GN At5g27470 PE 2 SV 1
blastp_uniprot_sprot sp|Q7KWQ2|SYSC_DICDI 204 248 + 45 Gaps:4 10.86 451 63.27 2e-13 Serine--tRNA ligase cytoplasmic OS Dictyostelium discoideum GN serS PE 1 SV 1
blastp_uniprot_sprot sp|C4LGQ1|SYS_CORK4 168 245 + 78 Gaps:22 22.22 423 44.68 8e-12 Serine--tRNA ligase OS Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN serS PE 3 SV 1
blastp_uniprot_sprot sp|Q5Z3K9|SYS_NOCFA 210 245 + 36 none 8.57 420 72.22 2e-11 Serine--tRNA ligase OS Nocardia farcinica (strain IFM 10152) GN serS PE 3 SV 1
blastp_uniprot_sprot sp|Q83HA1|SYS_TROW8 159 245 + 87 Gaps:15 24.46 417 39.22 3e-11 Serine--tRNA ligase OS Tropheryma whipplei (strain TW08/27) GN serS PE 3 SV 1
blastp_uniprot_sprot sp|Q83FJ7|SYS_TROWT 159 245 + 87 Gaps:15 24.46 417 39.22 3e-11 Serine--tRNA ligase OS Tropheryma whipplei (strain Twist) GN serS PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZBX1|SYS_STRCO 210 245 + 36 none 8.47 425 72.22 3e-11 Serine--tRNA ligase OS Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN serS PE 3 SV 1
blastp_uniprot_sprot sp|Q2NEU9|SYS_METST 210 244 + 35 none 8.25 424 74.29 4e-11 Serine--tRNA ligase OS Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN serS PE 3 SV 1
blastp_uniprot_sprot sp|Q0S9E8|SYS_RHOSR 210 245 + 36 none 8.61 418 69.44 5e-11 Serine--tRNA ligase OS Rhodococcus sp. (strain RHA1) GN serS PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 210 243 34 PTHR11778 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906";signature_desc=SERYL-TRNA SYNTHETASE none IPR002317
Gene3D 190 250 61 G3DSA:3.30.930.10 none none none
SUPERFAMILY 191 248 58 SSF55681 none none none
PANTHER 210 243 34 PTHR11778:SF0 none none none
PRINTS 223 235 13 PR00981 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" Seryl-tRNA synthetase signature IPR002317
PRINTS 235 248 14 PR00981 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" Seryl-tRNA synthetase signature IPR002317

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting