Protein : Qrob_P0679950.2 Q. robur
Protein Identifier  ? Qrob_P0679950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) 6.1.1.2 - Tryptophan--tRNA ligase. Code Enzyme  EC:6.1.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 412  
Kegg Orthology  K01867
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004830 tryptophan-tRNA ligase activity Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp).
GO:0006436 tryptophanyl-tRNA aminoacylation The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101509823 11 411 + 401 Gaps:1 100.00 400 85.75 0.0 tryptophan--tRNA ligase cytoplasmic-like
blastp_kegg lcl|cmo:103493459 1 411 + 411 Gaps:6 100.00 405 85.68 0.0 tryptophan--tRNA ligase cytoplasmic
blastp_kegg lcl|vvi:100257528 25 411 + 387 none 96.99 399 88.89 0.0 tryptophanyl-tRNA synthetase cytoplasmic-like
blastp_kegg lcl|csv:101203149 22 411 + 390 none 96.30 405 87.18 0.0 tryptophan--tRNA ligase cytoplasmic-like
blastp_kegg lcl|aly:ARALYDRAFT_477718 13 410 + 398 none 99.00 402 85.43 0.0 tRNA synthetase class I family protein
blastp_kegg lcl|eus:EUTSA_v10020864mg 21 410 + 390 none 97.74 399 87.18 0.0 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10013861mg 13 410 + 398 none 99.00 402 85.43 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_032s0040 11 411 + 401 Gaps:2 100.00 401 86.28 0.0 Tryptophanyl-tRNA synthetase
blastp_kegg lcl|tcc:TCM_041147 26 411 + 386 none 96.26 401 88.86 0.0 Nucleotidylyl transferase superfamily protein isoform 1
blastp_kegg lcl|ath:AT3G04600 13 410 + 398 none 99.00 402 85.43 0.0 tryptophanyl-tRNA synthetase-like protein
blastp_pdb 1ulh_B 24 406 + 383 Gaps:2 98.72 390 62.86 0.0 mol:protein length:390 Tryptophanyl-tRNA synthetase
blastp_pdb 1ulh_A 24 406 + 383 Gaps:2 98.72 390 62.86 0.0 mol:protein length:390 Tryptophanyl-tRNA synthetase
blastp_pdb 2quk_A 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_pdb 2quj_B 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_pdb 2quj_A 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_pdb 2qui_B 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_pdb 2qui_A 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_pdb 2quh_B 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_pdb 2quh_A 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_pdb 1r6t_B 21 406 + 386 Gaps:2 81.34 477 62.37 0.0 mol:protein length:477 Tryptophanyl-tRNA synthetase
blastp_uniprot_sprot sp|P23381|SYWC_HUMAN 21 406 + 386 Gaps:2 82.38 471 62.37 0.0 Tryptophan--tRNA ligase cytoplasmic OS Homo sapiens GN WARS PE 1 SV 2
blastp_uniprot_sprot sp|Q5R4J1|SYWC_PONAB 21 406 + 386 Gaps:2 82.20 472 62.37 0.0 Tryptophan--tRNA ligase cytoplasmic OS Pongo abelii GN WARS PE 2 SV 2
blastp_uniprot_sprot sp|P23612|SYWC_RABIT 22 406 + 385 Gaps:2 81.47 475 62.02 0.0 Tryptophan--tRNA ligase cytoplasmic OS Oryctolagus cuniculus GN WARS PE 2 SV 3
blastp_uniprot_sprot sp|Q6P7B0|SYWC_RAT 21 406 + 386 Gaps:2 80.67 481 61.86 9e-180 Tryptophan--tRNA ligase cytoplasmic OS Rattus norvegicus GN Wars PE 1 SV 2
blastp_uniprot_sprot sp|P32921|SYWC_MOUSE 21 406 + 386 Gaps:2 80.67 481 62.11 1e-179 Tryptophan--tRNA ligase cytoplasmic OS Mus musculus GN Wars PE 1 SV 2
blastp_uniprot_sprot sp|P17248|SYWC_BOVIN 21 406 + 386 Gaps:2 81.51 476 61.60 2e-179 Tryptophan--tRNA ligase cytoplasmic OS Bos taurus GN WARS PE 1 SV 3
blastp_uniprot_sprot sp|Q55DZ8|SYWC_DICDI 25 406 + 382 Gaps:5 96.25 400 57.40 3e-167 Tryptophan--tRNA ligase cytoplasmic OS Dictyostelium discoideum GN trpS PE 3 SV 1
blastp_uniprot_sprot sp|Q09692|SYWC_SCHPO 23 401 + 379 Gaps:5 97.22 395 55.21 1e-152 Tryptophan--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN wrs1 PE 1 SV 1
blastp_uniprot_sprot sp|Q12109|SYWC_YEAST 23 406 + 384 Gaps:12 90.28 432 54.10 9e-148 Tryptophan--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN WRS1 PE 1 SV 1
blastp_uniprot_sprot sp|O96771|SYW_ENCCU 24 403 + 380 Gaps:8 98.70 385 45.79 3e-123 Tryptophan--tRNA ligase OS Encephalitozoon cuniculi (strain GB-M1) GN ECU11_0530 PE 1 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 406 406 PTHR10055 "KEGG:00970+6.1.1.2","Reactome:REACT_71";signature_desc=TRYPTOPHANYL-TRNA SYNTHETASE none IPR002306
Pfam 96 382 287 PF00579 "Reactome:REACT_71" tRNA synthetases class I (W and Y) IPR002305
PRINTS 245 266 22 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
PRINTS 111 127 17 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
PRINTS 289 299 11 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
PRINTS 163 182 20 PR01039 "KEGG:00970+6.1.1.2","Reactome:REACT_71" Tryptophanyl-tRNA synthetase signature IPR002306
PANTHER 1 406 406 PTHR10055:SF1 none none none
ProSitePatterns 106 116 11 PS00178 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-I signature. IPR001412
Gene3D 41 294 254 G3DSA:3.40.50.620 none none IPR014729
SUPERFAMILY 24 404 381 SSF52374 none none none
Gene3D 295 407 113 G3DSA:1.10.240.10 none none none
TIGRFAM 97 402 306 TIGR00233 "KEGG:00970+6.1.1.2","Reactome:REACT_71" trpS: tryptophan--tRNA ligase IPR002306

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8

0 Targeting