Protein : Qrob_P0679330.2 Q. robur

Protein Identifier  ? Qrob_P0679330.2 Organism . Name  Quercus robur
Score  92.5 Score Type  egn
Protein Description  (M=36) 2.4.1.207 - Xyloglucan:xyloglucosyl transferase. Code Enzyme  EC:2.4.1.207
Gene Prediction Quality  validated Protein length 

Sequence

Length: 289  
Kegg Orthology  K08235

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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0010411 xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
GO:0006073 cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
GO:0016762 xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
GO:0048046 apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
GO:0042546 cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1194420 8 288 + 281 Gaps:2 97.91 287 69.75 1e-145 Brassinosteroid-regulated protein BRU1 precursor putative (EC:2.4.1.207)
blastp_kegg lcl|rcu:RCOM_1194430 8 288 + 281 Gaps:2 97.91 287 70.11 2e-145 Brassinosteroid-regulated protein BRU1 precursor putative (EC:2.4.1.207)
blastp_kegg lcl|pop:POPTR_0002s06130g 7 288 + 282 Gaps:1 95.58 294 67.62 4e-145 POPTRDRAFT_411405 xyloglucan endo-1 family protein
blastp_kegg lcl|vvi:100257235 11 288 + 278 Gaps:2 95.86 290 68.71 1e-141 brassinosteroid-regulated protein BRU1-like
blastp_kegg lcl|tcc:TCM_020198 2 288 + 287 Gaps:3 98.28 291 67.48 1e-140 Xyloglucan endotransglucosylase/hydrolase 16
blastp_kegg lcl|vvi:100252173 11 288 + 278 Gaps:1 94.90 294 68.46 1e-139 probable xyloglucan endotransglucosylase/hydrolase protein 16-like
blastp_kegg lcl|vvi:100250461 1 288 + 288 Gaps:12 98.22 281 71.38 1e-139 brassinosteroid-regulated protein BRU1-like
blastp_kegg lcl|pop:POPTR_0005s22300g 9 288 + 280 Gaps:1 94.90 294 66.31 2e-139 POPTRDRAFT_205198 xyloglucan endo-1 family protein
blastp_kegg lcl|pop:POPTR_0002s23730g 11 288 + 278 none 96.53 288 67.63 4e-138 POPTRDRAFT_711461 brassinosteroid-regulated family protein
blastp_kegg lcl|mdm:103443198 9 288 + 280 Gaps:3 95.93 295 66.43 5e-138 brassinosteroid-regulated protein BRU1-like
blastp_pdb 1un1_B 20 288 + 269 Gaps:9 94.24 278 56.87 5e-101 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1un1_A 20 288 + 269 Gaps:9 94.24 278 56.87 5e-101 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_B 20 288 + 269 Gaps:9 94.24 278 56.87 5e-101 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_A 20 288 + 269 Gaps:9 94.24 278 56.87 5e-101 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 2uwb_B 36 286 + 251 Gaps:17 89.89 267 41.67 2e-59 mol:protein length:267 CELLULASE
blastp_pdb 2uwb_A 36 286 + 251 Gaps:17 89.89 267 41.67 2e-59 mol:protein length:267 CELLULASE
blastp_pdb 2vh9_B 36 286 + 251 Gaps:17 82.76 290 41.67 3e-59 mol:protein length:290 CELLULASE
blastp_pdb 2vh9_A 36 286 + 251 Gaps:17 82.76 290 41.67 3e-59 mol:protein length:290 CELLULASE
blastp_pdb 2uwc_B 36 286 + 251 Gaps:22 90.41 271 41.22 3e-57 mol:protein length:271 CELLULASE
blastp_pdb 2uwc_A 36 286 + 251 Gaps:22 90.41 271 41.22 3e-57 mol:protein length:271 CELLULASE
blastp_uniprot_sprot sp|Q38911|XTH15_ARATH 12 288 + 277 Gaps:7 96.89 289 66.07 2e-136 Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS Arabidopsis thaliana GN XTH15 PE 1 SV 1
blastp_uniprot_sprot sp|P35694|BRU1_SOYBN 12 288 + 277 Gaps:9 94.70 283 68.66 1e-129 Brassinosteroid-regulated protein BRU1 OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|Q8LG58|XTH16_ARATH 14 288 + 275 Gaps:6 96.56 291 61.57 2e-129 Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS Arabidopsis thaliana GN XTH16 PE 2 SV 2
blastp_uniprot_sprot sp|Q38857|XTH22_ARATH 8 286 + 279 Gaps:7 98.59 284 61.79 2e-129 Xyloglucan endotransglucosylase/hydrolase protein 22 OS Arabidopsis thaliana GN XTH22 PE 1 SV 1
blastp_uniprot_sprot sp|Q38910|XTH23_ARATH 11 286 + 276 Gaps:3 96.15 286 61.09 4e-122 Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS Arabidopsis thaliana GN XTH23 PE 2 SV 1
blastp_uniprot_sprot sp|Q38907|XTH25_ARATH 11 288 + 278 Gaps:13 98.24 284 58.06 5e-119 Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS Arabidopsis thaliana GN XTH25 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FI31|XTH20_ARATH 11 286 + 276 Gaps:8 95.74 282 58.52 6e-116 Xyloglucan endotransglucosylase/hydrolase protein 20 OS Arabidopsis thaliana GN XTH20 PE 2 SV 1
blastp_uniprot_sprot sp|P24806|XTH24_ARATH 11 286 + 276 Gaps:20 97.40 269 61.83 1e-115 Xyloglucan endotransglucosylase/hydrolase protein 24 OS Arabidopsis thaliana GN XTH24 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ZV40|XTH21_ARATH 1 286 + 286 Gaps:10 97.05 305 54.05 2e-113 Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS Arabidopsis thaliana GN XTH21 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKL9|XTH12_ARATH 27 286 + 260 Gaps:15 90.18 285 60.31 7e-109 Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS Arabidopsis thaliana GN XTH12 PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 30 288 259 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 241 286 46 PF06955 none Xyloglucan endo-transglycosylase (XET) C-terminus IPR010713
PANTHER 1 288 288 PTHR31062:SF20 none none none
ProSitePatterns 102 112 11 PS01034 none Glycosyl hydrolases family 16 active sites. IPR008263
PANTHER 1 288 288 PTHR31062 none none none
Phobius 7 29 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 28 287 260 SSF49899 none none IPR013320
Gene3D 20 287 268 G3DSA:2.60.120.200 none none IPR013320
PRINTS 118 131 14 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 60 78 19 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 136 153 18 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PIRSF 1 288 288 PIRSF005604 none none IPR016455
Pfam 29 209 181 PF00722 none Glycosyl hydrolases family 16 IPR000757
Phobius 1 6 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23
SignalP_EUK 1 25 24
TMHMM 7 29 22

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting