Protein : Qrob_P0679300.2 Q. robur

Protein Identifier  ? Qrob_P0679300.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=36) 2.4.1.207 - Xyloglucan:xyloglucosyl transferase. Code Enzyme  EC:2.4.1.207
Gene Prediction Quality  validated Protein length 

Sequence

Length: 295  
Kegg Orthology  K08235

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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0010411 xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
GO:0006073 cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
GO:0016762 xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
GO:0048046 apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
GO:0042546 cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1194420 13 294 + 282 none 98.26 287 82.98 8e-178 Brassinosteroid-regulated protein BRU1 precursor putative (EC:2.4.1.207)
blastp_kegg lcl|rcu:RCOM_1194430 9 294 + 286 none 99.65 287 81.47 2e-177 Brassinosteroid-regulated protein BRU1 precursor putative (EC:2.4.1.207)
blastp_kegg lcl|pop:POPTR_0002s06130g 1 294 + 294 none 100.00 294 79.93 1e-175 POPTRDRAFT_411405 xyloglucan endo-1 family protein
blastp_kegg lcl|pop:POPTR_0005s22300g 14 294 + 281 none 95.58 294 81.85 2e-172 POPTRDRAFT_205198 xyloglucan endo-1 family protein
blastp_kegg lcl|pxb:103947454 8 293 + 286 Gaps:5 97.97 295 80.97 5e-171 brassinosteroid-regulated protein BRU1-like
blastp_kegg lcl|pxb:103947456 9 293 + 285 Gaps:5 97.63 295 80.90 5e-170 brassinosteroid-regulated protein BRU1-like
blastp_kegg lcl|mdm:103443198 9 293 + 285 Gaps:3 97.63 295 79.51 6e-170 brassinosteroid-regulated protein BRU1-like
blastp_kegg lcl|mdm:103405181 6 293 + 288 Gaps:4 99.32 294 80.14 1e-169 brassinosteroid-regulated protein BRU1-like
blastp_kegg lcl|pxb:103947458 6 293 + 288 Gaps:2 98.98 293 80.34 4e-169 brassinosteroid-regulated protein BRU1-like
blastp_kegg lcl|pop:POPTR_1065s00210g 29 294 + 266 none 98.15 271 83.83 2e-168 xyloglucan endo-1 family protein
blastp_pdb 1un1_B 31 292 + 262 Gaps:4 93.53 278 58.08 6e-107 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1un1_A 31 292 + 262 Gaps:4 93.53 278 58.08 6e-107 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_B 31 292 + 262 Gaps:4 93.53 278 58.08 6e-107 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_A 31 292 + 262 Gaps:4 93.53 278 58.08 6e-107 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 2uwb_B 31 288 + 258 Gaps:18 92.88 267 43.55 2e-60 mol:protein length:267 CELLULASE
blastp_pdb 2uwb_A 31 288 + 258 Gaps:18 92.88 267 43.55 2e-60 mol:protein length:267 CELLULASE
blastp_pdb 2vh9_B 31 288 + 258 Gaps:18 85.52 290 43.55 2e-60 mol:protein length:290 CELLULASE
blastp_pdb 2vh9_A 31 288 + 258 Gaps:18 85.52 290 43.55 2e-60 mol:protein length:290 CELLULASE
blastp_pdb 2uwc_B 31 288 + 258 Gaps:23 93.36 271 43.08 3e-58 mol:protein length:271 CELLULASE
blastp_pdb 2uwc_A 31 288 + 258 Gaps:23 93.36 271 43.08 3e-58 mol:protein length:271 CELLULASE
blastp_uniprot_sprot sp|P35694|BRU1_SOYBN 13 290 + 278 Gaps:8 95.41 283 72.96 1e-147 Brassinosteroid-regulated protein BRU1 OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|Q8LG58|XTH16_ARATH 9 292 + 284 Gaps:2 98.28 291 66.43 2e-145 Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS Arabidopsis thaliana GN XTH16 PE 2 SV 2
blastp_uniprot_sprot sp|Q38911|XTH15_ARATH 6 292 + 287 Gaps:4 98.62 289 67.72 3e-144 Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS Arabidopsis thaliana GN XTH15 PE 1 SV 1
blastp_uniprot_sprot sp|Q38910|XTH23_ARATH 1 288 + 288 Gaps:7 98.95 286 68.20 2e-137 Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS Arabidopsis thaliana GN XTH23 PE 2 SV 1
blastp_uniprot_sprot sp|Q38857|XTH22_ARATH 11 288 + 278 Gaps:5 96.83 284 66.91 2e-136 Xyloglucan endotransglucosylase/hydrolase protein 22 OS Arabidopsis thaliana GN XTH22 PE 1 SV 1
blastp_uniprot_sprot sp|Q38907|XTH25_ARATH 7 290 + 284 Gaps:9 98.94 284 64.77 7e-134 Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS Arabidopsis thaliana GN XTH25 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FI31|XTH20_ARATH 10 288 + 279 Gaps:9 97.16 282 61.68 1e-126 Xyloglucan endotransglucosylase/hydrolase protein 20 OS Arabidopsis thaliana GN XTH20 PE 2 SV 1
blastp_uniprot_sprot sp|P24806|XTH24_ARATH 19 291 + 273 Gaps:16 95.54 269 65.76 7e-126 Xyloglucan endotransglucosylase/hydrolase protein 24 OS Arabidopsis thaliana GN XTH24 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FKL9|XTH12_ARATH 25 288 + 264 Gaps:2 91.93 285 64.89 3e-125 Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS Arabidopsis thaliana GN XTH12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKL8|XTH13_ARATH 28 288 + 261 Gaps:2 91.20 284 64.86 9e-125 Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS Arabidopsis thaliana GN XTH13 PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 9 294 286 PTHR31062:SF20 none none none
Pfam 244 288 45 PF06955 none Xyloglucan endo-transglycosylase (XET) C-terminus IPR010713
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 25 292 268 G3DSA:2.60.120.200 none none IPR013320
Pfam 32 212 181 PF00722 none Glycosyl hydrolases family 16 IPR000757
Phobius 25 294 270 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 1 293 293 PIRSF005604 none none IPR016455
PANTHER 9 294 286 PTHR31062 none none none
SUPERFAMILY 31 291 261 SSF49899 none none IPR013320
Phobius 9 20 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 21 24 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

4 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 24 23
SignalP_EUK 1 24 23
TMHMM 7 29 22
SignalP_GRAM_POSITIVE 1 24 23

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting