Protein : Qrob_P0674370.2 Q. robur
Protein Identifier  ? Qrob_P0674370.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) K12392 - AP-1 complex subunit beta-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1024  
Kegg Orthology  K12392
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0030131 clathrin adaptor complex A membrane coat adaptor complex that links clathrin to a membrane.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0003s13040g 1 1022 + 1022 Gaps:96 99.89 904 68.55 0.0 POPTRDRAFT_757540 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0786070 1 1022 + 1022 Gaps:101 99.89 903 69.40 0.0 AP-2 complex subunit beta-1 putative
blastp_kegg lcl|gmx:100784577 1 1022 + 1022 Gaps:96 99.89 898 67.78 0.0 beta-adaptin-like protein C-like
blastp_kegg lcl|pxb:103963883 1 1022 + 1022 Gaps:103 99.89 907 67.33 0.0 beta-adaptin-like protein B
blastp_kegg lcl|pxb:103963875 1 1022 + 1022 Gaps:103 99.89 907 67.33 0.0 beta-adaptin-like protein B
blastp_kegg lcl|pmum:103337549 1 1022 + 1022 Gaps:99 99.89 903 68.40 0.0 beta-adaptin-like protein B
blastp_kegg lcl|pper:PRUPE_ppa001124mg 1 1022 + 1022 Gaps:99 99.89 903 68.29 0.0 hypothetical protein
blastp_kegg lcl|mdm:103454772 1 1022 + 1022 Gaps:98 99.89 902 67.70 0.0 beta-adaptin-like protein C
blastp_kegg lcl|gmx:100777522 1 1021 + 1021 Gaps:103 99.78 891 67.15 0.0 beta-adaptin-like protein C-like
blastp_kegg lcl|cit:102621964 1 1022 + 1022 Gaps:96 99.89 904 66.89 0.0 beta-adaptin-like protein B-like
blastp_pdb 2xa7_B 5 704 + 700 Gaps:9 88.68 592 71.43 0.0 mol:protein length:592 AP-2 COMPLEX SUBUNIT BETA
blastp_pdb 2vgl_B 5 704 + 700 Gaps:9 88.83 591 71.43 0.0 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_E 5 704 + 700 Gaps:9 88.83 591 71.43 0.0 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_B 5 704 + 700 Gaps:9 88.83 591 71.43 0.0 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_E 5 704 + 700 Gaps:9 88.83 591 71.43 0.0 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_B 5 704 + 700 Gaps:9 88.83 591 71.43 0.0 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 1w63_L 5 704 + 700 Gaps:3 85.27 584 74.30 0.0 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_J 5 704 + 700 Gaps:3 85.27 584 74.30 0.0 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_H 5 704 + 700 Gaps:3 85.27 584 74.30 0.0 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_F 5 704 + 700 Gaps:3 85.27 584 74.30 0.0 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_uniprot_sprot sp|Q9SUS3|APBLB_ARATH 1 1022 + 1022 Gaps:100 99.89 894 63.72 0.0 Beta-adaptin-like protein B OS Arabidopsis thaliana GN BETAB-AD PE 1 SV 1
blastp_uniprot_sprot sp|O81742|APBLC_ARATH 1 1022 + 1022 Gaps:9 90.93 893 86.95 0.0 Beta-adaptin-like protein C OS Arabidopsis thaliana GN BETAC-AD PE 1 SV 2
blastp_uniprot_sprot sp|Q54X82|AP1B_DICDI 5 1021 + 1017 Gaps:10 68.47 942 60.78 0.0 AP-1 complex subunit beta OS Dictyostelium discoideum GN ap1b1 PE 3 SV 1
blastp_uniprot_sprot sp|P63009|AP2B1_BOVIN 5 1022 + 1018 Gaps:91 99.57 937 52.73 0.0 AP-2 complex subunit beta OS Bos taurus GN AP2B1 PE 1 SV 2
blastp_uniprot_sprot sp|P62944|AP2B1_RAT 5 1022 + 1018 Gaps:91 99.57 937 52.73 0.0 AP-2 complex subunit beta OS Rattus norvegicus GN Ap2b1 PE 1 SV 1
blastp_uniprot_sprot sp|P63010|AP2B1_HUMAN 5 1022 + 1018 Gaps:91 99.57 937 52.73 0.0 AP-2 complex subunit beta OS Homo sapiens GN AP2B1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9DBG3|AP2B1_MOUSE 5 1022 + 1018 Gaps:91 99.57 937 52.73 0.0 AP-2 complex subunit beta OS Mus musculus GN Ap2b1 PE 1 SV 1
blastp_uniprot_sprot sp|Q08DS7|AP1B1_BOVIN 5 1022 + 1018 Gaps:81 99.58 951 51.74 0.0 AP-1 complex subunit beta-1 OS Bos taurus GN AP2B1 PE 2 SV 1
blastp_uniprot_sprot sp|O35643|AP1B1_MOUSE 5 1022 + 1018 Gaps:63 96.71 943 54.61 0.0 AP-1 complex subunit beta-1 OS Mus musculus GN Ap1b1 PE 1 SV 2
blastp_uniprot_sprot sp|Q10567|AP1B1_HUMAN 5 1022 + 1018 Gaps:75 96.73 949 54.25 0.0 AP-1 complex subunit beta-1 OS Homo sapiens GN AP1B1 PE 1 SV 2

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 793 905 113 G3DSA:2.60.40.1150 "Reactome:REACT_6185" none IPR013037
SUPERFAMILY 794 908 115 SSF49348 none none IPR013041
SUPERFAMILY 8 224 217 SSF48371 none none IPR016024
PANTHER 392 732 341 PTHR11134:SF3 none none none
PANTHER 2 190 189 PTHR11134:SF3 none none none
PANTHER 753 1022 270 PTHR11134:SF3 none none none
SUPERFAMILY 231 702 472 SSF48371 none none IPR016024
SUPERFAMILY 910 1022 113 SSF55711 none none IPR009028
Pfam 230 626 397 PF01602 none Adaptin N terminal region IPR002553
Pfam 16 217 202 PF01602 none Adaptin N terminal region IPR002553
Gene3D 907 1022 116 G3DSA:3.30.310.10 none none IPR012295
Gene3D 231 705 475 G3DSA:1.25.10.10 none none IPR011989
Gene3D 6 219 214 G3DSA:1.25.10.10 none none IPR011989
PANTHER 392 732 341 PTHR11134 none none IPR026739
PANTHER 2 190 189 PTHR11134 none none IPR026739
PANTHER 753 1022 270 PTHR11134 none none IPR026739
SMART 792 902 111 SM00809 none Adaptin C-terminal domain IPR008152
Pfam 911 1022 112 PF09066 none Beta2-adaptin appendage, C-terminal sub-domain IPR015151
Pfam 798 895 98 PF02883 none Adaptin C-terminal domain IPR008152
SMART 911 1022 112 SM01020 none Beta2-adaptin appendage, C-terminal sub-domain IPR015151

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting