Protein : Qrob_P0671350.2 Q. robur
Protein Identifier  ? Qrob_P0671350.2 Organism . Name  Quercus robur
Score  99.2 Score Type  egn
Protein Description  (M=1) 2.7.7.52 - RNA uridylyltransferase. Code Enzyme  EC:2.7.7.52
Gene Prediction Quality  validated Protein length 

Sequence

Length: 540  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1612650 1 538 + 538 Gaps:55 74.28 696 55.90 4e-150 poly(A) polymerase cid putative
blastp_kegg lcl|tcc:TCM_005467 1 538 + 538 Gaps:86 69.53 722 58.57 6e-142 Nucleotidyltransferase family protein isoform 1
blastp_kegg lcl|pop:POPTR_0002s15230g 1 538 + 538 Gaps:100 69.78 728 55.51 1e-128 POPTRDRAFT_644365 hypothetical protein
blastp_kegg lcl|mdm:103405731 1 538 + 538 Gaps:106 69.85 733 52.73 3e-116 uncharacterized LOC103405731
blastp_kegg lcl|vvi:100267790 14 538 + 525 Gaps:92 71.72 679 50.72 1e-115 uncharacterized LOC100267790
blastp_kegg lcl|pmum:103331931 1 538 + 538 Gaps:113 69.97 736 53.59 8e-113 poly(A) RNA polymerase gld-2 homolog A
blastp_kegg lcl|pper:PRUPE_ppa002004mg 1 538 + 538 Gaps:101 69.73 730 54.81 1e-111 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s06910g 1 527 + 527 Gaps:94 100.00 497 52.72 2e-110 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_010G086700g 1 538 + 538 Gaps:116 69.10 712 50.00 3e-107 hypothetical protein
blastp_kegg lcl|brp:103866223 4 538 + 535 Gaps:75 69.21 760 46.20 8e-106 uncharacterized LOC103866223
blastp_uniprot_sprot sp|Q5TAX3|TUT4_HUMAN 443 538 + 96 Gaps:6 6.20 1644 37.25 7e-08 Terminal uridylyltransferase 4 OS Homo sapiens GN ZCCHC11 PE 1 SV 3
blastp_uniprot_sprot sp|B2RX14|TUT4_MOUSE 443 538 + 96 Gaps:6 6.20 1644 37.25 7e-08 Terminal uridylyltransferase 4 OS Mus musculus GN Zcchc11 PE 1 SV 2
rpsblast_cdd gnl|CDD|143392 458 528 + 71 Gaps:1 63.16 114 30.56 6e-13 cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha mouse testis-specific cytoplasmic PAP beta human nuclear PAP gamma Saccharomyces cerevisiae PAP1 TRF4 and-5 Schizosaccharomyces pombe caffeine-induced death proteins -1 and -14 Caenorhabditis elegans Germ Line Development-2 and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1 and Trypanosoma brucei 3'-TUTase-1 -2 and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily two carboxylates Dx[D/E] together with a third more distal carboxylate coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family these carboxylate residues are conserved.
rpsblast_cdd gnl|CDD|34857 390 498 + 109 Gaps:6 21.37 482 29.13 1e-08 COG5260 TRF4 DNA polymerase sigma [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|204310 8 162 + 155 Gaps:22 25.25 804 30.54 3e-07 pfam09770 PAT1 Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 388 538 151 PTHR12271 none none none
PANTHER 388 538 151 PTHR12271:SF46 none none none
Pfam 464 503 40 PF01909 none Nucleotidyltransferase domain IPR002934
Gene3D 449 537 89 G3DSA:3.30.460.10 none none none
SUPERFAMILY 431 527 97 SSF81301 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting