Protein : Qrob_P0671120.2 Q. robur
Protein Identifier  ? Qrob_P0671120.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=1) PTHR24031:SF155 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC (PTHR24031:SF155) Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 805  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344529 1 804 + 804 Gaps:84 100.00 768 78.26 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa001778mg 1 804 + 804 Gaps:66 100.00 766 78.20 0.0 hypothetical protein
blastp_kegg lcl|gmx:100779706 1 800 + 800 Gaps:85 98.96 771 77.98 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic-like
blastp_kegg lcl|vvi:100251060 2 804 + 803 Gaps:51 99.74 764 76.51 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_001G220500g 1 800 + 800 Gaps:84 98.97 776 75.91 0.0 hypothetical protein
blastp_kegg lcl|mdm:103433812 1 804 + 804 Gaps:84 100.00 764 75.52 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic
blastp_kegg lcl|cmo:103492086 1 801 + 801 Gaps:55 100.00 748 75.53 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic
blastp_kegg lcl|gmx:100789516 2 800 + 799 Gaps:87 98.83 771 77.03 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic-like
blastp_kegg lcl|pxb:103930270 1 804 + 804 Gaps:85 100.00 765 75.03 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic-like
blastp_kegg lcl|pxb:103955819 1 804 + 804 Gaps:84 100.00 764 75.26 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic
blastp_pdb 1hv8_B 116 488 + 373 Gaps:24 97.28 367 38.38 1e-66 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 1hv8_A 116 488 + 373 Gaps:24 97.28 367 38.38 1e-66 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 2i4i_A 141 468 + 328 Gaps:21 81.77 417 40.76 4e-66 mol:protein length:417 ATP-dependent RNA helicase DDX3X
blastp_pdb 2db3_D 141 476 + 336 Gaps:18 76.50 434 38.86 1e-63 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_C 141 476 + 336 Gaps:18 76.50 434 38.86 1e-63 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_B 141 476 + 336 Gaps:18 76.50 434 38.86 1e-63 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_A 141 476 + 336 Gaps:18 76.50 434 38.86 1e-63 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 3ex7_H 108 500 + 393 Gaps:17 92.98 413 34.90 6e-63 mol:protein length:413 Eukaryotic initiation factor 4A-III
blastp_pdb 3ex7_C 108 500 + 393 Gaps:17 92.98 413 34.90 6e-63 mol:protein length:413 Eukaryotic initiation factor 4A-III
blastp_pdb 2hyi_I 108 500 + 393 Gaps:17 92.98 413 34.90 6e-63 mol:protein length:413 Probable ATP-dependent RNA helicase DDX48
blastp_uniprot_sprot sp|Q8L7S8|RH3_ARATH 1 707 + 707 Gaps:62 86.76 748 75.96 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic OS Arabidopsis thaliana GN RH3 PE 1 SV 2
blastp_uniprot_sprot sp|Q0DM51|RH3_ORYSJ 70 706 + 637 Gaps:47 78.10 758 77.20 0.0 DEAD-box ATP-dependent RNA helicase 3 chloroplastic OS Oryza sativa subsp. japonica GN Os03g0827700 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LUW5|RH53_ARATH 116 496 + 381 Gaps:4 61.20 616 63.13 5e-165 DEAD-box ATP-dependent RNA helicase 53 OS Arabidopsis thaliana GN RH53 PE 2 SV 1
blastp_uniprot_sprot sp|Q0D8N0|RH53_ORYSJ 105 502 + 398 Gaps:13 65.95 602 62.47 5e-164 DEAD-box ATP-dependent RNA helicase 53 OS Oryza sativa subsp. japonica GN Os07g0143700 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LUW6|RH9_ARATH 116 508 + 393 Gaps:4 63.77 610 61.18 4e-163 DEAD-box ATP-dependent RNA helicase 9 OS Arabidopsis thaliana GN RH9 PE 2 SV 1
blastp_uniprot_sprot sp|Q0ILZ4|RH9_ORYSJ 116 487 + 372 Gaps:5 58.44 628 60.76 4e-154 DEAD-box ATP-dependent RNA helicase 9 OS Oryza sativa subsp. japonica GN Os12g0611200 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BQ39|DDX50_HUMAN 94 582 + 489 Gaps:16 67.16 737 42.83 7e-112 ATP-dependent RNA helicase DDX50 OS Homo sapiens GN DDX50 PE 1 SV 1
blastp_uniprot_sprot sp|Q99MJ9|DDX50_MOUSE 105 588 + 484 Gaps:20 67.30 734 42.31 6e-111 ATP-dependent RNA helicase DDX50 OS Mus musculus GN Ddx50 PE 2 SV 1
blastp_uniprot_sprot sp|Q650T9|RH7_ORYSJ 110 691 + 582 Gaps:74 77.01 696 42.72 2e-110 DEAD-box ATP-dependent RNA helicase 7 OS Oryza sativa subsp. japonica GN Os09g0520700 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NR30|DDX21_HUMAN 94 745 + 652 Gaps:82 79.18 783 39.52 3e-108 Nucleolar RNA helicase 2 OS Homo sapiens GN DDX21 PE 1 SV 5

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 334 490 157 G3DSA:3.40.50.300 none none IPR027417
SMART 379 459 81 SM00490 none helicase superfamily c-terminal domain IPR001650
Pfam 784 800 17 PF00098 none Zinc knuckle IPR001878
ProSiteProfiles 116 144 29 PS51195 none DEAD-box RNA helicase Q motif profile. IPR014014
PANTHER 660 735 76 PTHR24031 none none none
SMART 135 342 208 SM00487 none DEAD-like helicases superfamily IPR014001
Pfam 603 691 89 PF08152 none GUCT (NUC152) domain IPR012562
SUPERFAMILY 766 803 38 SSF57756 none none IPR001878
ProSiteProfiles 147 325 179 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Gene3D 106 333 228 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 785 800 16 PS50158 none Zinc finger CCHC-type profile. IPR001878
ProSiteProfiles 354 506 153 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 660 735 76 PTHR24031:SF155 none none none
Gene3D 783 801 19 G3DSA:4.10.60.10 none none IPR001878
SUPERFAMILY 195 480 286 SSF52540 none none IPR027417
PANTHER 93 510 418 PTHR24031 none none none
Pfam 388 459 72 PF00271 none Helicase conserved C-terminal domain IPR001650
PANTHER 93 510 418 PTHR24031:SF155 none none none
SMART 784 800 17 SM00343 none zinc finger IPR001878
Pfam 141 314 174 PF00270 none DEAD/DEAH box helicase IPR011545

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting