Protein : Qrob_P0668820.2 Q. robur
Protein Identifier  ? Qrob_P0668820.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=2) K03245 - translation initiation factor eIF-3 subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 220  
Kegg Orthology  K03245
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103336828 1 219 + 219 Gaps:5 100.00 222 77.48 1e-105 eukaryotic translation initiation factor 3 subunit J-like
blastp_kegg lcl|rcu:RCOM_1220860 1 219 + 219 Gaps:5 100.00 222 82.88 2e-105 Eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|pper:PRUPE_ppa011146mg 1 219 + 219 Gaps:5 100.00 222 76.13 9e-103 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s08050g 1 219 + 219 Gaps:3 100.00 222 76.58 8e-102 POPTRDRAFT_714222 translation initiation factor-related family protein
blastp_kegg lcl|mdm:103401542 1 219 + 219 Gaps:8 100.00 227 73.13 2e-99 eukaryotic translation initiation factor 3 subunit J-like
blastp_kegg lcl|mdm:103436857 1 219 + 219 Gaps:8 100.00 227 72.69 4e-99 eukaryotic translation initiation factor 3 subunit J-like
blastp_kegg lcl|pxb:103962492 1 219 + 219 Gaps:8 100.00 227 72.25 3e-98 eukaryotic translation initiation factor 3 subunit J-like
blastp_kegg lcl|tcc:TCM_021280 1 219 + 219 Gaps:3 100.00 220 76.82 6e-97 Eukaryotic translation initiation factor 3 subunit J
blastp_kegg lcl|cmo:103501389 1 219 + 219 Gaps:4 100.00 219 76.26 1e-96 eukaryotic translation initiation factor 3 subunit J-like
blastp_kegg lcl|pxb:103936035 1 219 + 219 Gaps:8 100.00 227 73.57 1e-93 eukaryotic translation initiation factor 3 subunit J-like
blastp_pdb 3bpj_D 111 185 + 75 none 93.75 80 32.00 2e-07 mol:protein length:80 Eukaryotic translation initiation factor 3 su
blastp_pdb 3bpj_C 111 185 + 75 none 93.75 80 32.00 2e-07 mol:protein length:80 Eukaryotic translation initiation factor 3 su
blastp_pdb 3bpj_B 111 185 + 75 none 93.75 80 32.00 2e-07 mol:protein length:80 Eukaryotic translation initiation factor 3 su
blastp_pdb 3bpj_A 111 185 + 75 none 93.75 80 32.00 2e-07 mol:protein length:80 Eukaryotic translation initiation factor 3 su
blastp_uniprot_sprot sp|B4NX24|EIF3J_DROYA 2 219 + 218 Gaps:20 99.15 236 34.19 3e-17 Eukaryotic translation initiation factor 3 subunit J OS Drosophila yakuba GN Adam PE 3 SV 1
blastp_uniprot_sprot sp|Q8I1G8|EIF3J_DROER 2 219 + 218 Gaps:20 99.15 236 34.19 5e-17 Eukaryotic translation initiation factor 3 subunit J OS Drosophila erecta GN Adam PE 3 SV 1
blastp_uniprot_sprot sp|B4MP81|EIF3J_DROWI 2 219 + 218 Gaps:20 99.15 236 34.19 8e-17 Eukaryotic translation initiation factor 3 subunit J OS Drosophila willistoni GN Adam PE 3 SV 1
blastp_uniprot_sprot sp|B4J4E7|EIF3J_DROGR 2 205 + 204 Gaps:25 91.56 237 34.56 9e-17 Eukaryotic translation initiation factor 3 subunit J OS Drosophila grimshawi GN Adam PE 3 SV 1
blastp_uniprot_sprot sp|Q7K550|EIF3J_DROME 2 219 + 218 Gaps:20 99.15 236 34.62 1e-16 Eukaryotic translation initiation factor 3 subunit J OS Drosophila melanogaster GN Adam PE 1 SV 1
blastp_uniprot_sprot sp|Q54KI0|EIF3J_DICDI 77 198 + 122 Gaps:7 58.90 219 31.78 7e-16 Eukaryotic translation initiation factor 3 subunit J OS Dictyostelium discoideum GN eif3J PE 3 SV 1
blastp_uniprot_sprot sp|A7RSH7|EIF3J_NEMVE 1 175 + 175 Gaps:29 80.97 247 34.50 8e-16 Eukaryotic translation initiation factor 3 subunit J OS Nematostella vectensis GN v1g240395 PE 3 SV 1
blastp_uniprot_sprot sp|B4LN42|EIF3J_DROVI 2 180 + 179 Gaps:21 81.36 236 34.90 1e-15 Eukaryotic translation initiation factor 3 subunit J OS Drosophila virilis GN Adam PE 3 SV 1
blastp_uniprot_sprot sp|B4KTH6|EIF3J_DROMO 2 175 + 174 Gaps:21 79.24 236 35.29 2e-15 Eukaryotic translation initiation factor 3 subunit J OS Drosophila mojavensis GN Adam PE 3 SV 1
blastp_uniprot_sprot sp|B4QHU5|EIF3J_DROSI 2 219 + 218 Gaps:20 99.15 236 33.76 6e-15 Eukaryotic translation initiation factor 3 subunit J OS Drosophila simulans GN Adam PE 3 SV 1
rpsblast_cdd gnl|CDD|203994 1 219 + 219 Gaps:25 100.00 242 37.19 1e-37 pfam08597 eIF3_subunit Translation initiation factor eIF3 subunit. This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
rpsblast_kog gnl|CDD|40010 1 217 + 217 Gaps:24 94.76 248 39.57 8e-22 KOG4813 KOG4813 KOG4813 Translation initiation factor eIF3 p35 subunit [Translation ribosomal structure and biogenesis].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 108 186 79 G3DSA:1.10.246.60 none none IPR023194
PANTHER 1 219 219 PTHR21681 none none IPR013906
Pfam 1 219 219 PF08597 none Translation initiation factor eIF3 subunit IPR013906

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting