Protein : Qrob_P0666320.2 Q. robur
Protein Identifier  ? Qrob_P0666320.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11667 - INO80 complex subunit C Gene Prediction Quality  validated
Protein length 

Sequence

Length: 125  
Kegg Orthology  K11667
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006338 chromatin remodeling Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
GO:0031011 Ino80 complex A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103956211 1 124 + 124 none 100.00 124 90.32 5e-80 chromatin-remodeling complex subunit ies6
blastp_kegg lcl|cic:CICLE_v10029589mg 1 124 + 124 none 100.00 124 88.71 3e-79 hypothetical protein
blastp_kegg lcl|cit:102617798 1 124 + 124 none 100.00 124 88.71 3e-79 INO80 complex subunit C-like
blastp_kegg lcl|rcu:RCOM_0977290 1 124 + 124 none 100.00 124 88.71 5e-79 hypothetical protein
blastp_kegg lcl|pmum:103338974 1 124 + 124 none 100.00 124 88.71 1e-78 chromatin-remodeling complex subunit ies6
blastp_kegg lcl|pper:PRUPE_ppa024988mg 1 124 + 124 none 50.82 244 88.71 6e-78 hypothetical protein
blastp_kegg lcl|gmx:100775452 1 124 + 124 none 82.12 151 83.87 4e-76 chromatin-remodeling complex subunit ies6-like
blastp_kegg lcl|csv:101205065 1 124 + 124 none 100.00 124 83.87 9e-76 INO80 complex subunit C-like
blastp_kegg lcl|cmo:103485837 1 124 + 124 none 100.00 124 83.87 2e-75 INO80 complex subunit C
blastp_kegg lcl|mtr:MTR_3g082190 1 124 + 124 none 100.00 124 83.87 2e-75 INO80 complex subunit C
blastp_uniprot_sprot sp|Q8BHA0|IN80C_MOUSE 33 123 + 91 none 47.64 191 42.86 7e-20 INO80 complex subunit C OS Mus musculus GN Ino80c PE 2 SV 1
blastp_uniprot_sprot sp|Q9UTE8|IES6_SCHPO 28 124 + 97 Gaps:1 82.05 117 44.79 2e-19 Chromatin-remodeling complex subunit ies6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ies6 PE 3 SV 1
blastp_uniprot_sprot sp|Q5BJY3|IN80C_RAT 33 123 + 91 none 47.64 191 40.66 5e-19 INO80 complex subunit C OS Rattus norvegicus GN Ino80c PE 2 SV 1
blastp_uniprot_sprot sp|Q6PI98|IN80C_HUMAN 33 123 + 91 none 47.40 192 40.66 6e-19 INO80 complex subunit C OS Homo sapiens GN INO80C PE 1 SV 1
blastp_uniprot_sprot sp|P32617|IES6_YEAST 58 124 + 67 Gaps:1 40.96 166 45.59 2e-12 Chromatin-remodeling complex subunit IES6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN IES6 PE 1 SV 1
rpsblast_cdd gnl|CDD|34794 26 124 + 99 Gaps:1 83.05 118 39.80 2e-18 COG5195 COG5195 Uncharacterized conserved protein [Function unknown].
rpsblast_cdd gnl|CDD|191983 73 102 + 30 none 100.00 30 53.33 3e-09 pfam08265 YL1_C YL1 nuclear protein C-terminal domain. This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins.
rpsblast_cdd gnl|CDD|198061 73 102 + 30 none 100.00 30 60.00 3e-08 smart00993 YL1_C YL1 nuclear protein C-terminal domain. This domain is found in proteins of the YL1 family. These proteins have been shown to be DNA-binding and may be a transcription factor. This domain is found in proteins that are not YL1 proteins.
rpsblast_kog gnl|CDD|39340 23 124 + 102 none 100.00 102 43.14 5e-19 KOG4137 KOG4137 KOG4137 Uncharacterized conserved protein [Function unknown].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 73 102 30 PF08265 none YL1 nuclear protein C-terminal domain IPR013272
PANTHER 16 124 109 PTHR31200:SF1 none none IPR029525
SMART 73 102 30 SM00993 none YL1 nuclear protein C-terminal domain IPR013272
PANTHER 16 124 109 PTHR31200 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting