Protein : Qrob_P0656310.2 Q. robur
Protein Identifier  ? Qrob_P0656310.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K18734 - protein SMG8 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1230  
Kegg Orthology  K18734
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267175 58 1216 + 1159 Gaps:34 95.02 1226 71.24 0.0 uncharacterized LOC100267175
blastp_kegg lcl|pper:PRUPE_ppa000392mg 15 1222 + 1208 Gaps:60 98.43 1213 70.52 0.0 hypothetical protein
blastp_kegg lcl|pmum:103327406 17 1222 + 1206 Gaps:60 98.27 1213 70.30 0.0 uncharacterized LOC103327406
blastp_kegg lcl|pxb:103961646 7 1222 + 1216 Gaps:69 99.26 1220 68.79 0.0 uncharacterized LOC103961646
blastp_kegg lcl|rcu:RCOM_0474930 1 1215 + 1215 Gaps:68 98.86 1233 66.37 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_041589 58 1216 + 1159 Gaps:41 95.49 1219 67.78 0.0 Uncharacterized protein isoform 1
blastp_kegg lcl|cic:CICLE_v10027698mg 1 1215 + 1215 Gaps:55 99.09 1207 68.23 0.0 hypothetical protein
blastp_kegg lcl|cit:102626935 1 1215 + 1215 Gaps:55 99.09 1207 68.14 0.0 uncharacterized LOC102626935
blastp_kegg lcl|fve:101291573 1 1146 + 1146 Gaps:71 96.08 1173 67.44 0.0 uncharacterized protein LOC101291573
blastp_kegg lcl|gmx:100795370 52 1216 + 1165 Gaps:54 95.88 1213 64.32 0.0 uncharacterized LOC100795370
blastp_uniprot_sprot sp|A1A4J7|SMG8_BOVIN 317 688 + 372 Gaps:77 34.53 999 28.99 8e-22 Protein SMG8 OS Bos taurus GN SMG8 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VE18|SMG8_MOUSE 317 688 + 372 Gaps:77 34.81 991 29.28 2e-21 Protein SMG8 OS Mus musculus GN Smg8 PE 2 SV 1
blastp_uniprot_sprot sp|Q8ND04|SMG8_HUMAN 317 688 + 372 Gaps:77 34.81 991 29.28 4e-21 Protein SMG8 OS Homo sapiens GN SMG8 PE 1 SV 1
blastp_uniprot_sprot sp|Q0VA04|SMG8_XENTR 554 688 + 135 Gaps:14 15.19 915 35.25 1e-18 Protein smg8 OS Xenopus tropicalis GN smg8 PE 2 SV 1
blastp_uniprot_sprot sp|B0W730|SMG8_CULQU 553 694 + 142 Gaps:14 15.35 912 36.43 2e-18 Protein SMG8 OS Culex quinquefasciatus GN CPIJ003128 PE 3 SV 1
blastp_uniprot_sprot sp|Q17G65|SMG8_AEDAE 529 707 + 179 Gaps:20 19.54 916 34.08 3e-18 Protein SMG8 OS Aedes aegypti GN AAEL003157 PE 3 SV 1
blastp_uniprot_sprot sp|B4KKN5|SMG8_DROMO 556 688 + 133 Gaps:12 12.72 967 38.21 5e-13 Protein SMG8 OS Drosophila mojavensis GN GI17817 PE 3 SV 1
blastp_uniprot_sprot sp|B5E0H4|SMG8_DROPS 556 688 + 133 Gaps:10 12.91 953 36.59 7e-13 Protein SMG8 OS Drosophila pseudoobscura pseudoobscura GN GA24994 PE 3 SV 1
blastp_uniprot_sprot sp|B4GH42|SMG8_DROPE 556 688 + 133 Gaps:10 12.91 953 36.59 7e-13 Protein SMG8 OS Drosophila persimilis GN GL17013 PE 3 SV 1
blastp_uniprot_sprot sp|B4LS82|SMG8_DROVI 556 688 + 133 Gaps:10 12.79 962 35.77 4e-11 Protein SMG8 OS Drosophila virilis GN GJ17645 PE 3 SV 1
rpsblast_cdd gnl|CDD|150832 555 1211 + 657 Gaps:45 25.73 890 38.43 2e-24 pfam10220 DUF2146 Uncharacterized conserved protein (DUF2146). This is a family of proteins conserved from plants to humans. In Dictyostelium it is annotated as Mss11p but this could not be confirmed. Mss11p is required for the activation of pseudo-hyphal and invasive growth by Ste12p in yeast.
rpsblast_kog gnl|CDD|38896 554 688 + 135 Gaps:1 15.44 881 34.56 3e-20 KOG3692 KOG3692 KOG3692 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37135 3 65 + 63 Gaps:12 6.44 1102 52.11 3e-07 KOG1924 KOG1924 KOG1924 RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms Cytoskeleton].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 242 269 28 PTHR13091 none none none
PANTHER 1060 1223 164 PTHR13091 none none none
PANTHER 120 200 81 PTHR13091 none none none
PANTHER 537 720 184 PTHR13091 none none none
PANTHER 762 961 200 PTHR13091 none none none
PANTHER 297 517 221 PTHR13091 none none none
PANTHER 17 101 85 PTHR13091 none none none
PANTHER 242 269 28 PTHR13091:SF0 none none IPR028802
PANTHER 1060 1223 164 PTHR13091:SF0 none none IPR028802
PANTHER 762 961 200 PTHR13091:SF0 none none IPR028802
PANTHER 297 517 221 PTHR13091:SF0 none none IPR028802
PANTHER 120 200 81 PTHR13091:SF0 none none IPR028802
PANTHER 537 720 184 PTHR13091:SF0 none none IPR028802
PANTHER 17 101 85 PTHR13091:SF0 none none IPR028802
Pfam 554 689 136 PF10220 none Uncharacterized conserved protein (DUF2146) IPR019354
Pfam 1082 1212 131 PF10220 none Uncharacterized conserved protein (DUF2146) IPR019354

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting