Protein : Qrob_P0656250.2 Q. robur
Protein Identifier  ? Qrob_P0656250.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR21596:SF12 - PROTEIN SUPPRESSOR OF GENE SILENCING 3 (PTHR21596:SF12) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 135  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0031047 gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003336mg 1 110 + 110 none 18.84 584 81.82 5e-59 hypothetical protein
blastp_kegg lcl|pxb:103931518 1 114 + 114 none 17.90 637 79.82 1e-58 protein SUPPRESSOR OF GENE SILENCING 3-like
blastp_kegg lcl|pmum:103327162 1 110 + 110 none 17.43 631 80.91 2e-58 protein SUPPRESSOR OF GENE SILENCING 3-like
blastp_kegg lcl|mdm:103431201 1 114 + 114 none 15.97 714 78.07 6e-58 protein SUPPRESSOR OF GENE SILENCING 3-like
blastp_kegg lcl|pop:POPTR_0019s00300g 1 114 + 114 none 17.54 650 78.95 8e-58 POPTRDRAFT_836008 hypothetical protein
blastp_kegg lcl|tcc:TCM_001667 1 110 + 110 none 17.05 645 80.91 2e-57 XS domain-containing protein / XS zinc finger domain-containing protein-related isoform 1
blastp_kegg lcl|pper:PRUPE_ppa003956mg 1 110 + 110 none 20.45 538 79.09 8e-57 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1176800 1 114 + 114 Gaps:2 17.67 634 80.36 9e-57 hypothetical protein
blastp_kegg lcl|mdm:103429351 1 110 + 110 none 17.83 617 79.09 2e-56 protein SUPPRESSOR OF GENE SILENCING 3-like
blastp_kegg lcl|pxb:103948752 1 110 + 110 none 17.77 619 79.09 3e-56 protein SUPPRESSOR OF GENE SILENCING 3-like
blastp_uniprot_sprot sp|A1Y2B7|SGS3_MAIZE 1 114 + 114 none 19.19 594 69.30 1e-50 Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS Zea mays GN SGS3 PE 1 SV 1
blastp_uniprot_sprot sp|A5YVF1|SGS3_SOLLC 1 109 + 109 none 17.22 633 70.64 3e-49 Protein SUPPRESSOR OF GENE SILENCING 3 OS Solanum lycopersicum GN SGS3 PE 1 SV 1
blastp_uniprot_sprot sp|Q2QWE9|SGS3_ORYSJ 1 114 + 114 Gaps:1 18.88 609 65.22 4e-46 Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS Oryza sativa subsp. japonica GN SGS3 PE 3 SV 1
blastp_uniprot_sprot sp|A2ZIW7|SGS3_ORYSI 1 114 + 114 Gaps:1 18.88 609 65.22 5e-46 Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS Oryza sativa subsp. indica GN SGS3 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LDX1|SGS3_ARATH 1 114 + 114 Gaps:1 18.08 625 64.60 1e-45 Protein SUPPRESSOR OF GENE SILENCING 3 OS Arabidopsis thaliana GN SGS3 PE 1 SV 1
rpsblast_cdd gnl|CDD|190648 2 101 + 100 Gaps:5 81.90 116 29.47 5e-08 pfam03468 XS XS domain. The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 110 110 PTHR21596 none none none
Pfam 2 102 101 PF03468 none XS domain IPR005380
PANTHER 1 110 110 PTHR21596:SF12 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting