Protein : Qrob_P0655920.2 Q. robur
Protein Identifier  ? Qrob_P0655920.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K16911 - ATP-dependent RNA helicase DDX21 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 655  
Kegg Orthology  K16911
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100258263 1 637 + 637 Gaps:31 89.45 711 74.53 0.0 DEAD-box ATP-dependent RNA helicase 7-like
blastp_kegg lcl|gmx:100820207 1 634 + 634 Gaps:13 90.48 693 72.89 0.0 DEAD-box ATP-dependent RNA helicase 7-like
blastp_kegg lcl|pmum:103333301 1 637 + 637 Gaps:9 91.01 690 78.34 0.0 DEAD-box ATP-dependent RNA helicase 7
blastp_kegg lcl|pper:PRUPE_ppa002304mg 1 637 + 637 Gaps:9 91.01 690 78.18 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_007G063700g 1 636 + 636 Gaps:23 90.46 713 70.70 0.0 hypothetical protein
blastp_kegg lcl|pxb:103941249 1 637 + 637 Gaps:19 91.65 683 76.36 0.0 DEAD-box ATP-dependent RNA helicase 7-like
blastp_kegg lcl|pxb:103935461 1 637 + 637 Gaps:15 91.65 683 76.36 0.0 DEAD-box ATP-dependent RNA helicase 7-like
blastp_kegg lcl|mdm:103439691 1 637 + 637 Gaps:12 91.69 686 76.15 0.0 DEAD-box ATP-dependent RNA helicase 7
blastp_kegg lcl|cam:101504526 116 637 + 522 none 76.76 680 80.84 0.0 DEAD-box ATP-dependent RNA helicase 7-like
blastp_kegg lcl|gmx:100805921 1 642 + 642 Gaps:35 92.83 697 70.48 0.0 DEAD-box ATP-dependent RNA helicase 7-like
blastp_pdb 2db3_D 145 478 + 334 Gaps:16 75.58 434 39.94 2e-62 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_C 145 478 + 334 Gaps:16 75.58 434 39.94 2e-62 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_B 145 478 + 334 Gaps:16 75.58 434 39.94 2e-62 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2db3_A 145 478 + 334 Gaps:16 75.58 434 39.94 2e-62 mol:protein length:434 ATP-dependent RNA helicase vasa
blastp_pdb 2i4i_A 145 483 + 339 Gaps:17 83.93 417 37.43 4e-59 mol:protein length:417 ATP-dependent RNA helicase DDX3X
blastp_pdb 1hv8_B 135 495 + 361 Gaps:31 93.73 367 35.76 1e-54 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 1hv8_A 135 495 + 361 Gaps:31 93.73 367 35.76 1e-54 mol:protein length:367 PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669
blastp_pdb 2z0m_A 135 471 + 337 Gaps:28 91.69 337 37.54 3e-54 mol:protein length:337 337aa long hypothetical ATP-dependent RNA hel
blastp_pdb 1s2m_A 120 506 + 387 Gaps:34 92.75 400 34.23 4e-47 mol:protein length:400 Putative ATP-dependent RNA helicase DHH1
blastp_pdb 2gxu_A 130 328 + 199 Gaps:15 92.75 207 48.44 5e-45 mol:protein length:207 heat resistant RNA dependent ATPase
blastp_uniprot_sprot sp|Q41382|RH7_SPIOL 98 634 + 537 Gaps:4 77.81 685 73.92 0.0 DEAD-box ATP-dependent RNA helicase 7 OS Spinacia oleracea GN RH7 PE 2 SV 1
blastp_uniprot_sprot sp|Q39189|RH7_ARATH 112 638 + 527 Gaps:1 78.69 671 74.05 0.0 DEAD-box ATP-dependent RNA helicase 7 OS Arabidopsis thaliana GN RH7 PE 1 SV 2
blastp_uniprot_sprot sp|Q650T9|RH7_ORYSJ 118 646 + 529 Gaps:3 76.44 696 69.74 0.0 DEAD-box ATP-dependent RNA helicase 7 OS Oryza sativa subsp. japonica GN Os09g0520700 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NR30|DDX21_HUMAN 109 624 + 516 Gaps:17 65.77 783 44.85 3e-133 Nucleolar RNA helicase 2 OS Homo sapiens GN DDX21 PE 1 SV 5
blastp_uniprot_sprot sp|Q3B8Q1|DDX21_RAT 101 619 + 519 Gaps:16 66.37 782 44.32 4e-133 Nucleolar RNA helicase 2 OS Rattus norvegicus GN Ddx21 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BQ39|DDX50_HUMAN 90 620 + 531 Gaps:21 72.73 737 43.10 6e-132 ATP-dependent RNA helicase DDX50 OS Homo sapiens GN DDX50 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JIK5|DDX21_MOUSE 115 619 + 505 Gaps:16 59.34 851 44.75 3e-131 Nucleolar RNA helicase 2 OS Mus musculus GN Ddx21 PE 1 SV 3
blastp_uniprot_sprot sp|Q99MJ9|DDX50_MOUSE 90 623 + 534 Gaps:19 73.16 734 42.83 9e-131 ATP-dependent RNA helicase DDX50 OS Mus musculus GN Ddx50 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DM51|RH3_ORYSJ 51 620 + 570 Gaps:50 71.50 758 41.51 9e-104 DEAD-box ATP-dependent RNA helicase 3 chloroplastic OS Oryza sativa subsp. japonica GN Os03g0827700 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L7S8|RH3_ARATH 106 620 + 515 Gaps:28 69.12 748 40.04 5e-101 DEAD-box ATP-dependent RNA helicase 3 chloroplastic OS Arabidopsis thaliana GN RH3 PE 1 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 277 285 9 PS00039 none DEAD-box subfamily ATP-dependent helicases signature. IPR000629
ProSiteProfiles 151 333 183 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Pfam 399 465 67 PF00271 none Helicase conserved C-terminal domain IPR001650
Gene3D 105 344 240 G3DSA:3.40.50.300 none none IPR027417
Gene3D 345 495 151 G3DSA:3.40.50.300 none none IPR027417
PANTHER 17 503 487 PTHR24031 none none none
PANTHER 588 622 35 PTHR24031 none none none
SUPERFAMILY 198 478 281 SSF52540 none none IPR027417
Pfam 145 321 177 PF00270 none DEAD/DEAH box helicase IPR011545
Pfam 554 634 81 PF08152 none GUCT (NUC152) domain IPR012562
ProSiteProfiles 362 504 143 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SUPERFAMILY 558 632 75 SSF54928 none none none
SMART 388 465 78 SM00490 none helicase superfamily c-terminal domain IPR001650
SMART 139 351 213 SM00487 none DEAD-like helicases superfamily IPR014001
Coils 50 71 22 Coil none none none
ProSiteProfiles 120 148 29 PS51195 none DEAD-box RNA helicase Q motif profile. IPR014014
PANTHER 17 503 487 PTHR24031:SF136 none none none
PANTHER 588 622 35 PTHR24031:SF136 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting