Protein : Qrob_P0655230.2 Q. robur
Protein Identifier  ? Qrob_P0655230.2 Organism . Name  Quercus robur
Protein Description  (M=3) PTHR11638:SF69 - ENDOPEPTIDASE CLP ATP-BINDING CHAIN Alias (in v1)  Qrob_P0320210.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 860  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0019538 protein metabolic process The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100254493 1 859 + 859 Gaps:17 100.00 848 77.59 0.0 chaperone protein ClpB1-like
blastp_kegg lcl|tcc:TCM_022872 1 859 + 859 Gaps:12 100.00 857 74.68 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
blastp_kegg lcl|cit:102621295 1 859 + 859 Gaps:19 100.00 854 74.36 0.0 uncharacterized LOC102621295
blastp_kegg lcl|cic:CICLE_v10011051mg 1 859 + 859 Gaps:19 100.00 854 73.89 0.0 hypothetical protein
blastp_kegg lcl|pxb:103961712 1 859 + 859 Gaps:50 100.00 879 70.53 0.0 uncharacterized LOC103961712
blastp_kegg lcl|pxb:103940721 1 859 + 859 Gaps:48 100.00 881 69.58 0.0 uncharacterized LOC103940721
blastp_kegg lcl|pper:PRUPE_ppa001252mg 1 859 + 859 Gaps:39 100.00 872 73.28 0.0 hypothetical protein
blastp_kegg lcl|mdm:103454151 1 859 + 859 Gaps:48 100.00 881 69.13 0.0 uncharacterized LOC103454151
blastp_kegg lcl|pmum:103341703 1 859 + 859 Gaps:43 100.00 872 72.02 0.0 uncharacterized LOC103341703
blastp_kegg lcl|pop:POPTR_0006s22090g 1 859 + 859 Gaps:49 100.00 842 74.23 0.0 POPTRDRAFT_417859 heat shock family protein
blastp_uniprot_sprot sp|P42730|CLPB1_ARATH 10 311 + 302 Gaps:44 30.52 911 32.37 4e-19 Chaperone protein ClpB1 OS Arabidopsis thaliana GN CLPB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6F2Y7|CLPB1_ORYSJ 12 289 + 278 Gaps:39 28.18 912 31.13 8e-13 Chaperone protein ClpB1 OS Oryza sativa subsp. japonica GN CLPB1 PE 2 SV 1
blastp_uniprot_sprot sp|P31540|HSP98_NEUCR 6 311 + 306 Gaps:48 32.15 927 25.17 1e-07 Heat shock protein hsp98 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN hsp98 PE 1 SV 2
blastp_uniprot_sprot sp|P74459|CLPB1_SYNY3 606 786 + 181 Gaps:15 18.93 898 28.82 2e-06 Chaperone protein ClpB 1 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN clpB1 PE 3 SV 1
blastp_uniprot_sprot sp|O67588|CLPB_AQUAE 605 786 + 182 Gaps:37 17.00 1006 28.07 2e-06 Chaperone protein ClpB OS Aquifex aeolicus (strain VF5) GN clpB PE 3 SV 1
blastp_uniprot_sprot sp|O31673|CLPE_BACSU 616 825 + 210 Gaps:19 27.32 699 24.61 3e-06 ATP-dependent Clp protease ATP-binding subunit ClpE OS Bacillus subtilis (strain 168) GN clpE PE 1 SV 1
rpsblast_cdd gnl|CDD|30888 12 308 + 297 Gaps:42 33.97 786 25.84 1e-13 COG0542 ClpA ATPases with chaperone activity ATP-binding subunit [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|163223 12 298 + 287 Gaps:61 30.99 852 25.76 7e-09 TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease but rather serves to disaggregate misfolded and aggregated proteins.
rpsblast_cdd gnl|CDD|163222 12 274 + 263 Gaps:36 29.46 852 24.30 2e-08 TIGR03345 VI_ClpV1 type VI secretion ATPase ClpV1 family. Members of this protein family are homologs of ClpB an ATPase associated with chaperone-related functions. These ClpB homologs designated ClpV1 are a key component of the bacterial pathogenicity-associated type VI secretion system.
rpsblast_kog gnl|CDD|36269 1 859 + 859 Gaps:97 87.08 898 33.25 1e-133 KOG1051 KOG1051 KOG1051 Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification protein turnover chaperones].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 584 859 276 PTHR11638:SF69 none none none
Pfam 23 54 32 PF02861 none Clp amino terminal domain IPR004176
Pfam 130 167 38 PF02861 none Clp amino terminal domain IPR004176
Gene3D 607 786 180 G3DSA:3.40.50.300 none none IPR027417
PANTHER 584 859 276 PTHR11638 none none none
SUPERFAMILY 12 163 152 SSF81923 none none none
Gene3D 11 166 156 G3DSA:1.10.1780.10 none none IPR023150
SUPERFAMILY 606 788 183 SSF52540 none none IPR027417
PANTHER 6 529 524 PTHR11638 none none none
PANTHER 6 529 524 PTHR11638:SF69 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting