Protein : Qrob_P0654470.2 Q. robur
Protein Identifier  ? Qrob_P0654470.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14815 - mRNA turnover protein 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 176  
Kegg Orthology  K14815
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244591 1 170 + 170 Gaps:24 84.72 229 47.42 4e-37 mRNA turnover protein 4 homolog-like
blastp_kegg lcl|pda:103718119 1 170 + 170 Gaps:24 84.72 229 44.33 5e-35 mRNA turnover protein 4 homolog
blastp_kegg lcl|tcc:TCM_006421 1 172 + 172 Gaps:28 85.59 229 45.41 2e-34 Ribosomal protein L10 family protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa010931mg 1 162 + 162 Gaps:24 81.22 229 44.09 5e-34 hypothetical protein
blastp_kegg lcl|pmum:103319134 1 162 + 162 Gaps:24 81.22 229 44.09 8e-34 mRNA turnover protein 4 homolog
blastp_kegg lcl|mdm:103421377 1 162 + 162 Gaps:23 80.80 224 46.96 2e-33 mRNA turnover protein 4 homolog
blastp_kegg lcl|fve:101299190 1 162 + 162 Gaps:26 81.22 229 43.55 3e-33 mRNA turnover protein 4 homolog
blastp_kegg lcl|pvu:PHAVU_006G212200g 1 163 + 163 Gaps:28 81.66 229 44.92 4e-33 hypothetical protein
blastp_kegg lcl|mdm:103428923 1 162 + 162 Gaps:26 81.22 229 44.09 7e-33 mRNA turnover protein 4 homolog
blastp_kegg lcl|brp:103835442 1 162 + 162 Gaps:28 81.22 229 46.24 2e-32 mRNA turnover protein 4 homolog
blastp_uniprot_sprot sp|Q9D0I8|MRT4_MOUSE 1 63 + 63 none 26.36 239 46.03 2e-10 mRNA turnover protein 4 homolog OS Mus musculus GN Mrto4 PE 2 SV 1
blastp_uniprot_sprot sp|A4FV84|MRT4_BOVIN 1 63 + 63 none 26.36 239 46.03 2e-10 mRNA turnover protein 4 homolog OS Bos taurus GN MRTO4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UKD2|MRT4_HUMAN 1 63 + 63 none 26.36 239 46.03 3e-10 mRNA turnover protein 4 homolog OS Homo sapiens GN MRTO4 PE 1 SV 2
blastp_uniprot_sprot sp|Q6FJ04|MRT4_CANGA 1 58 + 58 none 24.27 239 43.10 3e-09 mRNA turnover protein 4 homolog OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN MRT4 PE 3 SV 1
blastp_uniprot_sprot sp|Q75DK9|MRT4_ASHGO 1 57 + 57 none 24.15 236 43.86 5e-08 mRNA turnover protein 4 homolog OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN MRT4 PE 3 SV 1
blastp_uniprot_sprot sp|P33201|MRT4_YEAST 1 57 + 57 none 24.15 236 42.11 9e-08 mRNA turnover protein 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MRT4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9USZ6|MRT4_SCHPO 1 63 + 63 none 26.14 241 34.92 1e-06 mRNA turnover protein 4 homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN mrt4 PE 3 SV 1
blastp_uniprot_sprot sp|Q7S302|MRT4_NEUCR 1 62 + 62 none 24.60 252 40.32 2e-06 mRNA turnover protein 4 homolog OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN NCU07547 PE 3 SV 1
blastp_uniprot_sprot sp|Q86HD3|MRT4_DICDI 1 57 + 57 none 25.56 223 42.11 3e-06 mRNA turnover protein 4 homolog OS Dictyostelium discoideum GN mrt4 PE 3 SV 1
rpsblast_cdd gnl|CDD|88596 22 63 + 42 none 25.77 163 45.24 5e-09 cd05796 Ribosomal_P0_like Ribosomal protein L10 family P0-like protein subfamily composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0 including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu however there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2..
rpsblast_kog gnl|CDD|36034 1 63 + 63 none 28.25 223 53.97 1e-18 KOG0816 KOG0816 KOG0816 Protein involved in mRNA turnover [RNA processing and modification].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 20 65 46 PF00466 none Ribosomal protein L10 IPR001790
PANTHER 13 66 54 PTHR21141 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting