Protein : Qrob_P0649980.2 Q. robur
Protein Identifier  ? Qrob_P0649980.2 Organism . Name  Quercus robur
Score  91.1 Score Type  egn
Protein Description  (M=1) K14852 - regulator of ribosome biosynthesis Gene Prediction Quality  validated
Protein length 

Sequence

Length: 328  
Kegg Orthology  K14852
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341054 1 327 + 327 Gaps:1 100.00 328 73.48 6e-167 ribosome biogenesis regulatory protein homolog
blastp_kegg lcl|vvi:100253336 6 303 + 298 Gaps:1 90.33 331 77.26 1e-161 ribosome biogenesis regulatory protein homolog-like
blastp_kegg lcl|tcc:TCM_038057 2 314 + 313 Gaps:4 94.91 334 74.13 1e-160 Ribosome biogenesis regulatory protein (RRS1) family protein isoform 1
blastp_kegg lcl|vvi:100252416 6 303 + 298 Gaps:1 91.44 327 77.93 1e-159 ribosome biogenesis regulatory protein homolog-like
blastp_kegg lcl|fve:101302862 1 321 + 321 Gaps:2 93.90 344 70.59 2e-157 ribosome biogenesis regulatory protein homolog
blastp_kegg lcl|csv:101216908 1 327 + 327 none 99.39 329 75.84 4e-156 ribosome biogenesis regulatory protein homolog
blastp_kegg lcl|pop:POPTR_0005s25260g 1 313 + 313 Gaps:21 92.78 360 67.07 8e-156 POPTRDRAFT_206051 hypothetical protein
blastp_kegg lcl|sly:101263184 7 327 + 321 Gaps:1 97.87 329 70.19 1e-155 ribosome biogenesis regulatory protein homolog
blastp_kegg lcl|pxb:103958304 4 314 + 311 Gaps:4 94.79 326 73.46 1e-155 ribosome biogenesis regulatory protein homolog
blastp_kegg lcl|pvu:PHAVU_009G258100g 6 310 + 305 Gaps:2 91.92 334 71.66 1e-154 hypothetical protein
blastp_uniprot_sprot sp|Q9SH88|RRS1_ARATH 1 308 + 308 Gaps:6 94.97 318 65.89 2e-138 Ribosome biogenesis regulatory protein homolog OS Arabidopsis thaliana GN At2g37990 PE 2 SV 2
blastp_uniprot_sprot sp|Q2KIH4|RRS1_BOVIN 4 265 + 262 Gaps:31 68.22 365 42.17 9e-44 Ribosome biogenesis regulatory protein homolog OS Bos taurus GN RRS1 PE 2 SV 1
blastp_uniprot_sprot sp|Q15050|RRS1_HUMAN 4 265 + 262 Gaps:23 68.22 365 41.37 3e-43 Ribosome biogenesis regulatory protein homolog OS Homo sapiens GN RRS1 PE 1 SV 2
blastp_uniprot_sprot sp|A1A5P2|RRS1_RAT 1 265 + 265 Gaps:23 69.04 365 40.08 2e-42 Ribosome biogenesis regulatory protein homolog OS Rattus norvegicus GN Rrs1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CYH6|RRS1_MOUSE 1 265 + 265 Gaps:23 69.04 365 40.08 5e-42 Ribosome biogenesis regulatory protein homolog OS Mus musculus GN Rrs1 PE 2 SV 1
blastp_uniprot_sprot sp|A8WY26|RRS1_CAEBR 9 242 + 234 Gaps:13 67.78 329 40.36 9e-35 Ribosome biogenesis regulatory protein homolog OS Caenorhabditis briggsae GN rrbs-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9XVT0|RRS1_CAEEL 9 318 + 310 Gaps:18 88.29 333 35.03 1e-34 Ribosome biogenesis regulatory protein homolog OS Caenorhabditis elegans GN rrbs-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q869Q2|RRS1_DICDI 1 317 + 317 Gaps:28 93.69 317 35.69 6e-31 Ribosome biogenesis regulatory protein homolog OS Dictyostelium discoideum GN rrs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q08746|RRS1_YEAST 7 172 + 166 Gaps:24 90.64 203 39.67 6e-26 Regulator of ribosome biosynthesis OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RRS1 PE 1 SV 1
blastp_uniprot_sprot sp|O59678|RRS1_SCHPO 1 128 + 128 Gaps:6 77.11 166 39.84 8e-20 Ribosome biogenesis regulatory protein homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC29A3.16 PE 1 SV 1
rpsblast_cdd gnl|CDD|191135 8 170 + 163 Gaps:4 98.17 164 53.42 5e-50 pfam04939 RRS1 Ribosome biogenesis regulatory protein (RRS1). This family consists of several eukaryotic ribosome biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear protein that is essential for the maturation of 25 S rRNA and the 60 S ribosomal subunit assembly in Saccharomyces cerevisiae.
rpsblast_cdd gnl|CDD|34822 2 172 + 171 Gaps:7 96.51 172 36.14 4e-19 COG5225 RRS1 Uncharacterized protein involved in ribosome biogenesis [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|36976 1 174 + 174 Gaps:2 97.24 181 47.16 1e-42 KOG1765 KOG1765 KOG1765 Regulator of ribosome synthesis [Translation ribosomal structure and biogenesis].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 7 170 164 PF04939 none Ribosome biogenesis regulatory protein (RRS1) IPR007023
PANTHER 1 325 325 PTHR17602 none none IPR007023

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting