Protein : Qrob_P0632710.2 Q. robur
Protein Identifier  ? Qrob_P0632710.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12813 - pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 594  
Kegg Orthology  K12813
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa023487mg 1 593 + 593 Gaps:89 63.31 1052 65.77 0.0 hypothetical protein
blastp_kegg lcl|pmum:103330873 1 593 + 593 Gaps:89 63.31 1052 65.47 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
blastp_kegg lcl|pper:PRUPE_ppa000714mg 1 593 + 593 Gaps:67 62.38 1026 67.19 0.0 hypothetical protein
blastp_kegg lcl|pmum:103338448 1 593 + 593 Gaps:90 63.20 1049 65.61 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
blastp_kegg lcl|tcc:TCM_014166 1 593 + 593 Gaps:94 63.47 1054 66.37 0.0 RNA helicase family protein isoform 1
blastp_kegg lcl|vvi:100244993 1 593 + 593 Gaps:93 63.45 1056 64.03 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
blastp_kegg lcl|pop:POPTR_0015s01110g 6 593 + 588 Gaps:92 62.82 1057 64.16 0.0 RNA helicase family protein
blastp_kegg lcl|pvu:PHAVU_009G193400g 6 593 + 588 Gaps:88 62.80 1051 65.91 0.0 hypothetical protein
blastp_kegg lcl|pxb:103931362 1 593 + 593 Gaps:90 63.20 1049 65.61 0.0 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
blastp_kegg lcl|gmx:100809559 1 593 + 593 Gaps:89 63.29 1046 66.47 0.0 DHX16 DEAH (Asp-Glu-Ala-His) box polypeptide 16
blastp_pdb 3kx2_A 335 590 + 256 Gaps:4 33.90 767 56.15 5e-88 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 335 590 + 256 Gaps:4 33.90 767 56.15 5e-88 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 335 590 + 256 Gaps:4 33.64 773 56.15 6e-88 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 335 590 + 256 Gaps:4 33.64 773 56.15 6e-88 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3llm_B 328 508 + 181 Gaps:7 78.30 235 38.04 1e-34 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 328 508 + 181 Gaps:7 78.30 235 38.04 1e-34 mol:protein length:235 ATP-dependent RNA helicase A
blastp_uniprot_sprot sp|O45244|DHX16_CAEEL 7 593 + 587 Gaps:89 61.51 1008 48.23 8e-159 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS Caenorhabditis elegans GN mog-4 PE 1 SV 2
blastp_uniprot_sprot sp|Q10752|CDC28_SCHPO 7 593 + 587 Gaps:108 63.79 1055 44.13 4e-158 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cdc28 PE 3 SV 2
blastp_uniprot_sprot sp|Q767K6|DHX16_PIG 3 593 + 591 Gaps:97 62.97 1045 42.10 4e-147 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Sus scrofa GN DHX16 PE 3 SV 1
blastp_uniprot_sprot sp|O60231|DHX16_HUMAN 130 593 + 464 Gaps:57 47.55 1041 49.49 1e-144 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Homo sapiens GN DHX16 PE 1 SV 2
blastp_uniprot_sprot sp|Q54MH3|DHX16_DICDI 1 593 + 593 Gaps:66 55.24 1106 46.32 1e-141 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Dictyostelium discoideum GN dhx16 PE 3 SV 1
blastp_uniprot_sprot sp|Q14562|DHX8_HUMAN 333 593 + 261 none 21.39 1220 65.13 4e-113 ATP-dependent RNA helicase DHX8 OS Homo sapiens GN DHX8 PE 1 SV 1
blastp_uniprot_sprot sp|A2A4P0|DHX8_MOUSE 333 593 + 261 none 20.98 1244 65.13 6e-113 ATP-dependent RNA helicase DHX8 OS Mus musculus GN Dhx8 PE 2 SV 1
blastp_uniprot_sprot sp|Q38953|DHX8_ARATH 331 593 + 263 none 22.52 1168 63.50 2e-109 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS Arabidopsis thaliana GN At3g26560 PE 1 SV 2
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 307 593 + 287 Gaps:3 25.00 1160 56.90 3e-109 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|Q09530|MOG5_CAEEL 331 593 + 263 none 21.92 1200 62.36 3e-108 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS Caenorhabditis elegans GN mog-5 PE 1 SV 1
rpsblast_cdd gnl|CDD|31829 325 592 + 268 Gaps:7 31.36 845 55.09 6e-93 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 313 589 + 277 Gaps:17 21.82 1283 41.79 5e-64 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 337 589 + 253 Gaps:11 19.47 1294 44.44 7e-61 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_cdd gnl|CDD|162630 338 592 + 255 Gaps:12 30.40 819 38.96 2e-48 TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length while its paralog HrpA (TIGR01967) also uncharacterized is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 180 208 29 Coil none none none
Gene3D 337 495 159 G3DSA:3.40.50.300 none none IPR027417
SMART 336 520 185 SM00487 none DEAD-like helicases superfamily IPR014001
SUPERFAMILY 332 590 259 SSF52540 none none IPR027417
Coils 133 154 22 Coil none none none
ProSitePatterns 453 462 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
ProSiteProfiles 1 30 30 PS51195 none DEAD-box RNA helicase Q motif profile. IPR014014
Pfam 348 496 149 PF00270 none DEAD/DEAH box helicase IPR011545
PANTHER 1 593 593 PTHR18934 none none none
PANTHER 1 593 593 PTHR18934:SF83 none none none
ProSiteProfiles 348 511 164 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting