Protein : Qrob_P0631170.2 Q. robur
Protein Identifier  ? Qrob_P0631170.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K13679 - granule-bound starch synthase [EC:2.4.1.242] Code Enzyme  EC:2.4.1.242
Gene Prediction Quality  validated Protein length 

Sequence

Length: 665  
Kegg Orthology  K13679
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0004373 glycogen (starch) synthase activity Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1).

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103956358 1 664 + 664 Gaps:49 100.00 615 84.23 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|mdm:103439436 1 664 + 664 Gaps:49 100.00 615 84.07 0.0 GBSSIb granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|pper:PRUPE_ppa002955mg 1 664 + 664 Gaps:50 100.00 618 83.98 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10019346mg 1 664 + 664 Gaps:61 100.00 611 82.82 0.0 hypothetical protein
blastp_kegg lcl|cit:102577951 1 664 + 664 Gaps:61 100.00 611 82.65 0.0 SB2 putative granule-bound starch synthase
blastp_kegg lcl|fve:101296800 1 664 + 664 Gaps:62 100.00 606 81.68 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|vvi:100243677 1 664 + 664 Gaps:50 100.00 614 81.11 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|tcc:TCM_015612 1 664 + 664 Gaps:54 100.00 610 78.85 0.0 UDP-Glycosyltransferase superfamily protein isoform 1
blastp_kegg lcl|mdm:103454831 1 664 + 664 Gaps:52 100.00 614 77.85 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|pxb:103935950 1 664 + 664 Gaps:52 100.00 614 78.01 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_pdb 1rzv_B 91 629 + 539 Gaps:82 95.88 485 35.05 7e-56 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzv_A 91 629 + 539 Gaps:82 95.88 485 35.05 7e-56 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzu_B 91 629 + 539 Gaps:82 95.88 485 35.05 7e-56 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzu_A 91 629 + 539 Gaps:82 95.88 485 35.05 7e-56 mol:protein length:485 Glycogen synthase 1
blastp_pdb 3d1j_A 247 639 + 393 Gaps:29 79.66 477 35.00 2e-54 mol:protein length:477 Glycogen synthase
blastp_pdb 3guh_A 247 639 + 393 Gaps:29 78.35 485 35.00 1e-53 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4u_A 247 639 + 393 Gaps:29 78.35 485 35.00 1e-53 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4t_A 247 639 + 393 Gaps:29 78.35 485 35.00 1e-53 mol:protein length:485 Glycogen synthase
blastp_pdb 2qzs_A 247 639 + 393 Gaps:29 78.35 485 35.00 1e-53 mol:protein length:485 glycogen synthase
blastp_pdb 3cx4_A 247 639 + 393 Gaps:29 78.35 485 34.74 7e-53 mol:protein length:485 Glycogen synthase
blastp_uniprot_sprot sp|O82627|SSG1_ANTMA 1 664 + 664 Gaps:56 100.00 608 75.82 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Antirrhinum majus GN WAXY PE 2 SV 1
blastp_uniprot_sprot sp|Q00775|SSG1_SOLTU 1 664 + 664 Gaps:61 100.00 607 76.11 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Solanum tuberosum GN WAXY PE 1 SV 1
blastp_uniprot_sprot sp|Q43784|SSG1_MANES 1 664 + 664 Gaps:56 100.00 608 75.49 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Manihot esculenta GN WAXY PE 2 SV 1
blastp_uniprot_sprot sp|Q42857|SSG1_IPOBA 1 664 + 664 Gaps:58 100.00 608 74.67 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Ipomoea batatas GN WAXY PE 2 SV 2
blastp_uniprot_sprot sp|Q9MAQ0|SSG1_ARATH 1 664 + 664 Gaps:56 100.00 610 70.66 0.0 Probable granule-bound starch synthase 1 chloroplastic/amyloplastic OS Arabidopsis thaliana GN WAXY PE 2 SV 1
blastp_uniprot_sprot sp|Q43092|SSG1_PEA 1 664 + 664 Gaps:73 100.00 603 71.64 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|Q8LL05|SSG1B_HORVU 63 664 + 602 Gaps:48 98.41 565 71.76 0.0 Granule-bound starch synthase 1b chloroplastic/amyloplastic (Fragment) OS Hordeum vulgare PE 1 SV 1
blastp_uniprot_sprot sp|P09842|SSG1_HORVU 44 664 + 621 Gaps:49 95.52 603 68.23 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Hordeum vulgare GN WAXY PE 1 SV 1
blastp_uniprot_sprot sp|P0C585|SSG1_ORYSA 56 664 + 609 Gaps:50 92.24 606 68.87 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Oryza sativa GN WAXY PE 3 SV 1
blastp_uniprot_sprot sp|Q0DEV5|SSG1_ORYSJ 56 664 + 609 Gaps:47 92.28 609 68.15 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN WAXY PE 1 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 268 637 370 TIGR02095 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" glgA: glycogen/starch synthase, ADP-glucose type IPR011835
Gene3D 411 621 211 G3DSA:3.40.50.2000 none none none
PANTHER 260 425 166 PTHR12526:SF337 none none none
PANTHER 163 212 50 PTHR12526:SF337 none none none
PANTHER 91 135 45 PTHR12526 none none none
PANTHER 163 212 50 PTHR12526 none none none
Pfam 93 219 127 PF08323 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Starch synthase catalytic domain IPR013534
Pfam 258 400 143 PF08323 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Starch synthase catalytic domain IPR013534
SUPERFAMILY 91 217 127 SSF53756 none none none
Hamap 91 639 549 MF_00484 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Glycogen synthase [glgA]. IPR011835
PANTHER 450 659 210 PTHR12526:SF337 none none none
Pfam 456 576 121 PF00534 none Glycosyl transferases group 1 IPR001296
PANTHER 260 425 166 PTHR12526 none none none
PANTHER 450 659 210 PTHR12526 none none none
SUPERFAMILY 259 636 378 SSF53756 none none none
PANTHER 91 135 45 PTHR12526:SF337 none none none

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting