Protein : Qrob_P0630510.2 Q. robur
Protein Identifier  ? Qrob_P0630510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 5.5.1.19 - Lycopene beta-cyclase. Code Enzyme  EC:5.5.1.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 504  
Kegg Orthology  K06443
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO:0016117 carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252133 1 501 + 501 Gaps:1 99.60 504 89.44 0.0 lycopene beta cyclase chloroplastic-like
blastp_kegg lcl|pmum:103339232 1 501 + 501 Gaps:1 99.60 504 89.04 0.0 lycopene beta cyclase chloroplastic/chromoplastic
blastp_kegg lcl|pper:PRUPE_ppa004528mg 1 501 + 501 Gaps:1 99.60 504 88.65 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0006s04160g 1 501 + 501 Gaps:1 99.60 504 88.05 0.0 POPTRDRAFT_652630 Lycopene beta cyclase family protein
blastp_kegg lcl|pop:POPTR_0016s03980g 1 501 + 501 Gaps:1 99.60 504 87.25 0.0 POPTRDRAFT_667325 Lycopene beta cyclase family protein
blastp_kegg lcl|gmx:100810895 1 502 + 502 Gaps:1 99.21 507 87.08 0.0 lycopene beta cyclase chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_001G124400g 1 502 + 502 Gaps:1 99.21 507 86.88 0.0 hypothetical protein
blastp_kegg lcl|pxb:103933980 1 501 + 501 Gaps:1 99.60 504 87.65 0.0 lycopene beta cyclase chloroplastic/chromoplastic
blastp_kegg lcl|mdm:103454566 1 501 + 501 Gaps:1 99.60 504 87.05 0.0 lycopene beta cyclase chloroplastic/chromoplastic
blastp_kegg lcl|rcu:RCOM_1107490 1 502 + 502 Gaps:11 99.81 514 85.38 0.0 Lycopene beta cyclase chloroplast precursor putative (EC:5.3.99.8)
blastp_uniprot_sprot sp|Q43503|LCYB_SOLLC 1 501 + 501 Gaps:5 99.60 500 84.54 0.0 Lycopene beta cyclase chloroplastic OS Solanum lycopersicum GN LCY1 PE 1 SV 1
blastp_uniprot_sprot sp|Q43415|LCYB_CAPAN 1 501 + 501 Gaps:9 99.60 498 85.48 0.0 Lycopene beta cyclase chloroplastic/chromoplastic OS Capsicum annuum GN LCY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q43578|LCYB_TOBAC 1 502 + 502 Gaps:5 99.80 500 82.16 0.0 Lycopene beta cyclase chloroplastic OS Nicotiana tabacum GN LCY1 PE 1 SV 1
blastp_uniprot_sprot sp|Q38933|LCYB_ARATH 1 501 + 501 Gaps:10 99.60 501 80.36 0.0 Lycopene beta cyclase chloroplastic OS Arabidopsis thaliana GN LCY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q40424|LCYB_NARPS 1 501 + 501 Gaps:2 99.60 503 76.45 0.0 Lycopene beta cyclase chloroplastic/chromoplastic OS Narcissus pseudonarcissus GN LCY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SEA0|CCS_CITSI 61 502 + 442 Gaps:2 88.27 503 59.01 0.0 Capsanthin/capsorubin synthase chromoplast OS Citrus sinensis GN CCS PE 3 SV 1
blastp_uniprot_sprot sp|Q42435|CCS_CAPAN 60 502 + 443 Gaps:2 89.36 498 56.40 0.0 Capsanthin/capsorubin synthase chromoplast OS Capsicum annuum GN CCS PE 2 SV 1
blastp_uniprot_sprot sp|Q9M424|NXS_SOLTU 60 502 + 443 Gaps:2 89.36 498 55.06 2e-180 Neoxanthin synthase chloroplastic OS Solanum tuberosum GN NXS PE 1 SV 1
blastp_uniprot_sprot sp|Q38932|LCYE_ARATH 54 480 + 427 Gaps:18 82.25 524 37.59 6e-88 Lycopene epsilon cyclase chloroplastic OS Arabidopsis thaliana GN LUT2 PE 1 SV 2
blastp_uniprot_sprot sp|O65837|LCYE_SOLLC 54 480 + 427 Gaps:23 82.89 526 38.53 1e-86 Lycopene epsilon cyclase chloroplastic OS Solanum lycopersicum GN CRTL-E-1 PE 2 SV 1
rpsblast_cdd gnl|CDD|178082 60 502 + 443 Gaps:3 99.78 447 84.08 0.0 PLN02463 PLN02463 lycopene beta cyclase.
rpsblast_cdd gnl|CDD|130850 89 483 + 395 Gaps:9 100.00 388 42.01 1e-148 TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
rpsblast_cdd gnl|CDD|114555 89 480 + 392 Gaps:31 99.73 374 39.68 1e-132 pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants algae and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation harvest light for photosynthesis and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous and those with one beta and one epsilon ring are common however carotenoids with two epsilon rings are rare.
rpsblast_cdd gnl|CDD|178300 54 503 + 450 Gaps:34 84.69 529 38.84 9e-93 PLN02697 PLN02697 lycopene epsilon cyclase.
rpsblast_cdd gnl|CDD|30989 88 485 + 398 Gaps:35 99.24 396 19.34 2e-16 COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion].
rpsblast_cdd gnl|CDD|30999 87 381 + 295 Gaps:44 81.40 387 19.05 2e-12 COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].
rpsblast_cdd gnl|CDD|130849 89 459 + 371 Gaps:52 94.32 370 24.93 1e-10 TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
rpsblast_cdd gnl|CDD|200151 89 379 + 291 Gaps:52 98.64 295 22.68 8e-08 TIGR02032 GG-red-SF geranylgeranyl reductase family. This HMM represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 89 483 395 TIGR01790 none carotene-cycl: lycopene cyclase family protein IPR010108
Pfam 89 479 391 PF05834 none Lycopene cyclase protein IPR008671
PANTHER 87 415 329 PTHR13789 none none none
SUPERFAMILY 88 248 161 SSF51905 none none none
SUPERFAMILY 343 469 127 SSF51905 none none none
Gene3D 353 392 40 G3DSA:3.50.50.60 none none none
Gene3D 88 270 183 G3DSA:3.50.50.60 none none none
PANTHER 87 415 329 PTHR13789:SF189 none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting