Protein : Qrob_P0628710.2 Q. robur
Protein Identifier  ? Qrob_P0628710.2 Organism . Name  Quercus robur
Score  2.0 Score Type  egn
Protein Description  (M=1) K18995 - ATP-dependent RNA helicase DHX29 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1369  
Kegg Orthology  K18995
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103944973 8 1357 + 1350 Gaps:67 83.65 1437 78.87 0.0 ATP-dependent RNA helicase DHX36
blastp_kegg lcl|vvi:100247318 5 1362 + 1358 Gaps:55 83.95 1458 76.96 0.0 ATP-dependent RNA helicase DHX29-like
blastp_kegg lcl|tcc:TCM_006225 5 1357 + 1353 Gaps:58 83.46 1457 76.81 0.0 ATP-dependent RNA helicase putative isoform 1
blastp_kegg lcl|pmum:103319030 8 1357 + 1350 Gaps:71 83.74 1433 79.58 0.0 ATP-dependent RNA helicase DHX29
blastp_kegg lcl|pper:PRUPE_ppa000230mg 5 1357 + 1353 Gaps:71 84.36 1426 79.30 0.0 hypothetical protein
blastp_kegg lcl|fve:101315346 3 1357 + 1355 Gaps:80 82.83 1456 76.95 0.0 ATP-dependent RNA helicase DHX29-like
blastp_kegg lcl|cit:102612145 5 1357 + 1353 Gaps:60 83.44 1455 75.95 0.0 ATP-dependent RNA helicase DHX29-like
blastp_kegg lcl|rcu:RCOM_1374260 8 1357 + 1350 Gaps:55 80.58 1509 74.18 0.0 ATP-dependent RNA helicase putative
blastp_kegg lcl|gmx:100788401 8 1362 + 1355 Gaps:58 84.70 1438 72.99 0.0 ATP-dependent RNA helicase Dhx29-like
blastp_kegg lcl|cam:101500963 8 1362 + 1355 Gaps:65 84.26 1442 72.51 0.0 ATP-dependent RNA helicase DHX29-like
blastp_pdb 3llm_B 379 589 + 211 Gaps:15 86.81 235 46.08 4e-50 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 379 589 + 211 Gaps:15 86.81 235 46.08 4e-50 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3kx2_A 395 940 + 546 Gaps:65 53.06 767 42.26 1e-44 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 395 940 + 546 Gaps:65 53.06 767 42.26 1e-44 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 395 940 + 546 Gaps:65 52.65 773 42.26 1e-44 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 395 940 + 546 Gaps:65 52.65 773 42.26 1e-44 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3i4u_A 1029 1308 + 280 Gaps:66 79.26 270 30.37 7e-10 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_uniprot_sprot sp|A3KMI0|DHX29_XENLA 269 1358 + 1090 Gaps:125 66.96 1362 41.78 8e-126 ATP-dependent RNA helicase DHX29 OS Xenopus laevis GN dhx29 PE 2 SV 1
blastp_uniprot_sprot sp|Q7Z478|DHX29_HUMAN 269 1358 + 1090 Gaps:133 66.76 1369 40.15 9e-121 ATP-dependent RNA helicase DHX29 OS Homo sapiens GN DHX29 PE 1 SV 2
blastp_uniprot_sprot sp|Q6PGC1|DHX29_MOUSE 269 1358 + 1090 Gaps:153 66.81 1365 40.46 2e-119 ATP-dependent RNA helicase Dhx29 OS Mus musculus GN Dhx29 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VHK9|DHX36_MOUSE 303 1356 + 1054 Gaps:155 88.91 1001 40.34 2e-114 Probable ATP-dependent RNA helicase DHX36 OS Mus musculus GN Dhx36 PE 1 SV 2
blastp_uniprot_sprot sp|Q9H2U1|DHX36_HUMAN 385 1356 + 972 Gaps:129 76.98 1008 44.07 8e-112 Probable ATP-dependent RNA helicase DHX36 OS Homo sapiens GN DHX36 PE 1 SV 2
blastp_uniprot_sprot sp|Q6P158|DHX57_HUMAN 378 1358 + 981 Gaps:103 60.97 1386 41.07 7e-106 Putative ATP-dependent RNA helicase DHX57 OS Homo sapiens GN DHX57 PE 1 SV 2
blastp_uniprot_sprot sp|P24785|MLE_DROME 382 1349 + 968 Gaps:145 58.78 1293 42.11 3e-104 Dosage compensation regulator OS Drosophila melanogaster GN mle PE 2 SV 2
blastp_uniprot_sprot sp|Q6P5D3|DHX57_MOUSE 370 1358 + 989 Gaps:92 61.74 1388 40.37 2e-103 Putative ATP-dependent RNA helicase DHX57 OS Mus musculus GN Dhx57 PE 2 SV 2
blastp_uniprot_sprot sp|Q5R874|DHX9_PONAB 399 1358 + 960 Gaps:139 58.31 1269 38.78 4e-94 ATP-dependent RNA helicase A OS Pongo abelii GN DHX9 PE 2 SV 1
blastp_uniprot_sprot sp|Q08211|DHX9_HUMAN 399 1358 + 960 Gaps:139 58.27 1270 38.78 4e-94 ATP-dependent RNA helicase A OS Homo sapiens GN DHX9 PE 1 SV 4
rpsblast_cdd gnl|CDD|31829 370 1337 + 968 Gaps:120 85.09 845 35.05 3e-61 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|182986 406 937 + 532 Gaps:73 30.53 1294 42.53 8e-45 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_cdd gnl|CDD|162629 406 1096 + 691 Gaps:69 35.78 1283 43.14 9e-45 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1028 1123 96 PF04408 none Helicase associated domain (HA2) IPR007502
Phobius 1160 1368 209 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 5 605 601 PTHR18934 none none none
ProSiteProfiles 416 592 177 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Gene3D 801 883 83 G3DSA:3.40.50.300 none none IPR027417
Gene3D 696 761 66 G3DSA:3.40.50.300 none none IPR027417
Phobius 786 1000 215 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 1165 1311 147 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
PANTHER 686 763 78 PTHR18934 none none none
Phobius 1022 1056 35 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1033 1231 199 PTHR18934:SF87 none none none
Phobius 1141 1159 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 806 867 62 PF00271 none Helicase conserved C-terminal domain IPR001650
ProSiteProfiles 694 908 215 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 1033 1231 199 PTHR18934 none none none
PANTHER 1247 1358 112 PTHR18934 none none none
Phobius 768 785 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 946 1012 67 PF13966 none zinc-binding in reverse transcriptase IPR026960
PANTHER 803 939 137 PTHR18934 none none none
Phobius 1057 1079 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1001 1021 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 722 867 146 SM00490 none helicase superfamily c-terminal domain IPR001650
PANTHER 686 763 78 PTHR18934:SF87 none none none
PANTHER 1247 1358 112 PTHR18934:SF87 none none none
PANTHER 803 939 137 PTHR18934:SF87 none none none
Gene3D 406 575 170 G3DSA:3.40.50.300 none none IPR027417
Phobius 1 767 767 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 417 577 161 PF00270 none DEAD/DEAH box helicase IPR011545
Phobius 1080 1140 61 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 686 731 46 SSF52540 none none IPR027417

3 Localization

Analysis Start End Length
TMHMM 768 790 22
TMHMM 1001 1023 22
TMHMM 1057 1079 22

0 Qtllist

0 Targeting