Protein : Qrob_P0619500.2 Q. robur
Protein Identifier  ? Qrob_P0619500.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0147//KOG0670//KOG0920//KOG0921//KOG0922//KOG0923//KOG0924//KOG0925//KOG0926//KOG2888 - Transcriptional coactivator CAPER (RRM superfamily) [Transcription]. // U4/U6-associated splicing factor PRP4 [RNA processing and modification]. // ATP-dependent RNA helicase A [RNA processing and modification]. // Dosage compensation complex subunit MLE [Transcription]. // DEAH-box RNA helicase [RNA processing and modification]. // mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]. // mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]. // mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]. // DEAH-box RNA helicase [RNA processing and modification Translation ribosomal structure and biogenesis]. // Putative RNA binding protein [General function prediction only]. Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1204  
Kegg Orthology  K12818
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101302977 4 1203 + 1200 Gaps:18 99.92 1203 86.69 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|mdm:103421874 4 1203 + 1200 Gaps:23 99.92 1200 86.57 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase
blastp_kegg lcl|vvi:100241659 1 1203 + 1203 Gaps:36 100.00 1175 88.51 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|fve:101314555 4 1203 + 1200 Gaps:36 99.92 1189 85.86 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|pop:POPTR_0015s05960g 1 1203 + 1203 Gaps:38 100.00 1177 87.26 0.0 ATP-dependent RNA helicase family protein
blastp_kegg lcl|pmum:103331118 4 1203 + 1200 Gaps:27 99.92 1194 86.34 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase
blastp_kegg lcl|rcu:RCOM_1602810 6 1203 + 1198 Gaps:42 99.07 1177 85.68 0.0 ATP-dependent RNA helicase putative
blastp_kegg lcl|pop:POPTR_0012s01120g 1 1203 + 1203 Gaps:47 99.92 1207 83.25 0.0 POPTRDRAFT_569452 ATP-dependent RNA helicase family protein
blastp_kegg lcl|sly:101267328 1 1203 + 1203 Gaps:17 100.00 1190 84.37 0.0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like
blastp_kegg lcl|atr:s00025p00202360 8 1203 + 1196 Gaps:43 99.75 1202 80.40 0.0 AMTR_s00025p00202360 hypothetical protein
blastp_pdb 3kx2_A 487 1192 + 706 Gaps:33 94.78 767 48.14 0.0 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 487 1192 + 706 Gaps:33 94.78 767 48.14 0.0 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 487 1192 + 706 Gaps:33 94.05 773 48.14 0.0 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 487 1192 + 706 Gaps:33 94.05 773 48.14 0.0 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3i4u_A 937 1170 + 234 none 86.67 270 70.51 3e-119 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_pdb 3llm_B 542 722 + 181 Gaps:7 78.30 235 39.67 1e-35 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 542 722 + 181 Gaps:7 78.30 235 39.67 1e-35 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 2eqs_A 246 332 + 87 Gaps:2 86.41 103 48.31 1e-18 mol:protein length:103 ATP-dependent RNA helicase DHX8
blastp_pdb 4am3_C 223 330 + 108 Gaps:9 15.76 717 42.48 3e-14 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4am3_B 223 330 + 108 Gaps:9 15.76 717 42.48 3e-14 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_uniprot_sprot sp|Q38953|DHX8_ARATH 245 1203 + 959 Gaps:2 82.28 1168 90.11 0.0 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS Arabidopsis thaliana GN At3g26560 PE 1 SV 2
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 194 1202 + 1009 Gaps:21 87.07 1160 66.14 0.0 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|Q14562|DHX8_HUMAN 204 1200 + 997 Gaps:20 80.57 1220 65.72 0.0 ATP-dependent RNA helicase DHX8 OS Homo sapiens GN DHX8 PE 1 SV 1
blastp_uniprot_sprot sp|A2A4P0|DHX8_MOUSE 200 1200 + 1001 Gaps:23 79.10 1244 65.85 0.0 ATP-dependent RNA helicase DHX8 OS Mus musculus GN Dhx8 PE 2 SV 1
blastp_uniprot_sprot sp|Q09530|MOG5_CAEEL 245 1200 + 956 Gaps:45 80.25 1200 61.16 0.0 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS Caenorhabditis elegans GN mog-5 PE 1 SV 1
blastp_uniprot_sprot sp|O42643|PRP22_SCHPO 8 1202 + 1195 Gaps:40 88.87 1168 55.97 0.0 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp22 PE 1 SV 1
blastp_uniprot_sprot sp|P24384|PRP22_YEAST 248 1202 + 955 Gaps:67 83.84 1145 50.52 0.0 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP22 PE 1 SV 1
blastp_uniprot_sprot sp|Q54MH3|DHX16_DICDI 538 1183 + 646 Gaps:4 58.77 1106 58.62 0.0 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Dictyostelium discoideum GN dhx16 PE 3 SV 1
blastp_uniprot_sprot sp|Q7YR39|DHX16_PANTR 540 1170 + 631 Gaps:3 60.54 1044 57.91 0.0 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Pan troglodytes GN DHX16 PE 3 SV 1
blastp_uniprot_sprot sp|O60231|DHX16_HUMAN 540 1170 + 631 Gaps:3 60.71 1041 57.91 0.0 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Homo sapiens GN DHX16 PE 1 SV 2

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 748 921 174 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 1 291 291 PTHR18934 none none none
SMART 249 320 72 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
Gene3D 245 325 81 G3DSA:2.40.50.140 none none IPR012340
PANTHER 1 291 291 PTHR18934:SF85 none none none
SUPERFAMILY 246 323 78 SSF50249 none none IPR012340
SMART 548 732 185 SM00487 none DEAD-like helicases superfamily IPR014001
Pfam 248 319 72 PF00575 none S1 RNA binding domain IPR003029
Gene3D 549 707 159 G3DSA:3.40.50.300 none none IPR027417
Pfam 1066 1164 99 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
SMART 941 1031 91 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502
SMART 776 880 105 SM00490 none helicase superfamily c-terminal domain IPR001650
Coils 106 141 36 Coil none none none
Coils 461 482 22 Coil none none none
ProSitePatterns 665 674 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
Pfam 942 1031 90 PF04408 none Helicase associated domain (HA2) IPR007502
PANTHER 382 1202 821 PTHR18934:SF85 none none none
PANTHER 382 1202 821 PTHR18934 none none none
ProSiteProfiles 560 723 164 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Gene3D 745 891 147 G3DSA:3.40.50.300 none none IPR027417
Pfam 793 880 88 PF00271 none Helicase conserved C-terminal domain IPR001650
SUPERFAMILY 540 1074 535 SSF52540 none none IPR027417
Pfam 557 706 150 PF00270 none DEAD/DEAH box helicase IPR011545
ProSiteProfiles 251 320 70 PS50126 none S1 domain profile. IPR003029

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting