Protein : Qrob_P0618990.2 Q. robur
Protein Identifier  ? Qrob_P0618990.2 Organism . Name  Quercus robur
Score  81.4 Score Type  egn
Protein Description  (M=1) 5.3.99.9 - Neoxanthin synthase. Code Enzyme  EC:5.3.99.9
Gene Prediction Quality  validated Protein length 

Sequence

Length: 502  
Kegg Orthology  K14593
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
GO:0016117 carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328479 1 500 + 500 Gaps:4 99.80 497 81.45 0.0 capsanthin/capsorubin synthase chromoplast-like
blastp_kegg lcl|pper:PRUPE_ppa004650mg 1 500 + 500 Gaps:4 99.80 497 81.65 0.0 hypothetical protein
blastp_kegg lcl|mdm:103424693 1 500 + 500 Gaps:13 99.80 496 81.21 0.0 capsanthin/capsorubin synthase chromoplast-like
blastp_kegg lcl|pxb:103966386 1 500 + 500 Gaps:5 99.80 496 81.01 0.0 capsanthin/capsorubin synthase chromoplast-like
blastp_kegg lcl|pxb:103963848 21 500 + 480 Gaps:4 95.97 496 82.14 0.0 capsanthin/capsorubin synthase chromoplast-like
blastp_kegg lcl|fve:101300786 1 501 + 501 Gaps:8 99.80 498 79.88 0.0 capsanthin/capsorubin synthase chromoplast-like
blastp_kegg lcl|tcc:TCM_046933 1 501 + 501 Gaps:5 100.00 496 79.03 0.0 Lycopene cyclase
blastp_kegg lcl|rcu:RCOM_1282010 1 501 + 501 Gaps:6 100.00 495 77.78 0.0 Capsanthin/capsorubin synthase chloroplast precursor putative (EC:5.3.99.8)
blastp_kegg lcl|cic:CICLE_v10028245mg 1 501 + 501 Gaps:8 100.00 503 77.34 0.0 hypothetical protein
blastp_kegg lcl|cit:102625209 1 501 + 501 Gaps:8 100.00 503 76.54 0.0 capsanthin/capsorubin synthase chromoplast-like
blastp_uniprot_sprot sp|Q9SEA0|CCS_CITSI 1 501 + 501 Gaps:8 100.00 503 77.34 0.0 Capsanthin/capsorubin synthase chromoplast OS Citrus sinensis GN CCS PE 3 SV 1
blastp_uniprot_sprot sp|Q9M424|NXS_SOLTU 36 501 + 466 Gaps:2 93.57 498 74.03 0.0 Neoxanthin synthase chloroplastic OS Solanum tuberosum GN NXS PE 1 SV 1
blastp_uniprot_sprot sp|Q42435|CCS_CAPAN 1 501 + 501 Gaps:17 100.00 498 71.08 0.0 Capsanthin/capsorubin synthase chromoplast OS Capsicum annuum GN CCS PE 2 SV 1
blastp_uniprot_sprot sp|Q43503|LCYB_SOLLC 56 496 + 441 Gaps:2 87.80 500 60.82 0.0 Lycopene beta cyclase chloroplastic OS Solanum lycopersicum GN LCY1 PE 1 SV 1
blastp_uniprot_sprot sp|Q38933|LCYB_ARATH 56 497 + 442 Gaps:4 88.22 501 59.73 0.0 Lycopene beta cyclase chloroplastic OS Arabidopsis thaliana GN LCY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q43415|LCYB_CAPAN 56 496 + 441 Gaps:2 88.15 498 59.91 0.0 Lycopene beta cyclase chloroplastic/chromoplastic OS Capsicum annuum GN LCY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q43578|LCYB_TOBAC 51 500 + 450 Gaps:2 89.60 500 58.48 0.0 Lycopene beta cyclase chloroplastic OS Nicotiana tabacum GN LCY1 PE 1 SV 1
blastp_uniprot_sprot sp|Q40424|LCYB_NARPS 12 497 + 486 Gaps:10 96.22 503 52.89 5e-179 Lycopene beta cyclase chloroplastic/chromoplastic OS Narcissus pseudonarcissus GN LCY1 PE 2 SV 1
blastp_uniprot_sprot sp|Q38932|LCYE_ARATH 85 483 + 399 Gaps:13 75.95 524 40.95 3e-90 Lycopene epsilon cyclase chloroplastic OS Arabidopsis thaliana GN LUT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q55276|LCYB_SYNE7 85 484 + 400 Gaps:7 96.11 411 36.46 2e-84 Lycopene beta cyclase OS Synechococcus elongatus (strain PCC 7942) GN crtL PE 1 SV 1
rpsblast_cdd gnl|CDD|178082 56 501 + 446 Gaps:4 99.78 447 63.90 0.0 PLN02463 PLN02463 lycopene beta cyclase.
rpsblast_cdd gnl|CDD|114555 86 479 + 394 Gaps:32 100.00 374 37.70 1e-122 pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants algae and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation harvest light for photosynthesis and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous and those with one beta and one epsilon ring are common however carotenoids with two epsilon rings are rare.
rpsblast_cdd gnl|CDD|130850 86 481 + 396 Gaps:10 100.00 388 39.43 1e-117 TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
rpsblast_cdd gnl|CDD|178300 85 482 + 398 Gaps:24 75.99 529 41.54 1e-90 PLN02697 PLN02697 lycopene epsilon cyclase.
rpsblast_cdd gnl|CDD|30989 86 479 + 394 Gaps:36 97.98 396 19.07 1e-17 COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion].
rpsblast_cdd gnl|CDD|30999 83 429 + 347 Gaps:42 90.18 387 22.06 2e-11 COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].
rpsblast_cdd gnl|CDD|130849 209 463 + 255 Gaps:33 63.24 370 23.93 7e-08 TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 86 481 396 TIGR01790 none carotene-cycl: lycopene cyclase family protein IPR010108
SUPERFAMILY 340 466 127 SSF51905 none none none
SUPERFAMILY 78 245 168 SSF51905 none none none
Gene3D 320 392 73 G3DSA:3.50.50.60 none none none
Gene3D 84 229 146 G3DSA:3.50.50.60 none none none
Pfam 86 477 392 PF05834 none Lycopene cyclase protein IPR008671

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 16 15

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting